RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 HYKKA2RU49 373 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 CD8B2A6NJW9 211 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 ZNF670-ZNF695F2Z2N8 137 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 CYR61O00622 381 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 SURF4O15260 269 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 CD8BP10966 210 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 PRKCDQ05655 676 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 PDZK1Q5T2W1 519 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 TMPRSS11AQ6ZMR5 421 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 RANBP3LQ86VV4 465 aaPredicted RBP9.6□□□□□ -0.87
LIMA1-201ENST00000341247 KLBQ86Z14 1044 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 CA13Q8N1Q1 262 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 ZNF619Q8N2I2 560 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 CADM2Q8N3J6 435 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 DTX3Q8N9I9 347 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 CNOT9Q92600 299 aaKnown RBP9.6□□□□□ -0.87
LIMA1-201ENST00000341247 OSTF1Q92882 214 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 RELTQ969Z4 430 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 SDHCQ99643 169 aaPredicted RBP9.6□□□□□ -0.87
LIMA1-201ENST00000341247 GSDMCQ9BYG8 508 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 LRP4O75096 1905 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 TNFRSF10CO14798 259 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 SNPHO15079 494 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 CHST10O43529 356 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 TNFSF14O43557 240 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 GALR3O60755 368 aaPredicted RBP9.6□□□□□ -0.87
LIMA1-201ENST00000341247 ATP6V1G1O75348 118 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 CLUP10909 449 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 SLC9A3P48764 834 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 EEF1A1P68104 462 aaKnown RBP9.6□□□□□ -0.87
LIMA1-201ENST00000341247 EFNB1P98172 346 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 FABP5Q01469 135 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 DECR1Q16698 335 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 ZNF181Q2M3W8 571 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 GDPD3Q7L5L3 318 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 OR2T33Q8NG76 320 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 FANK1Q8TC84 345 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 SPRYD4Q8WW59 207 aaPredicted RBP9.6□□□□□ -0.87
LIMA1-201ENST00000341247 FGF11Q92914 225 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 IFT27Q9BW83 186 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 ASXL3Q9C0F0 2248 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 UBQLN3Q9H347 655 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 NLGN3Q9NZ94 848 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 CRNNQ9UBG3 495 aaPredicted RBP9.6□□□□□ -0.87
LIMA1-201ENST00000341247 COMMD3Q9UBI1 195 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 MMP17Q9ULZ9 603 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 ABCA7Q8IZY2 2146 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 SAGE2PA6NJ88 616 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 SNTNA6NMZ2 147 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 TFECO14948 347 aaPredicted RBP9.6□□□□□ -0.87
LIMA1-201ENST00000341247 SERPINI2O75830 405 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 ZGLP1P0C6A0 271 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 FPR3P25089 353 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 SLC1A3P43003 542 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 BTG2P78543 158 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 RAB40BQ12829 278 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 FZD2Q14332 565 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 PRICKLE4Q2TBC4 344 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 MINDY4Q4G0A6 757 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 PRAMEF8Q5VWM4 474 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 PRAMEF7Q5VXH5 474 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 FAM131AQ6UXB0 335 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 THSD4Q6ZMP0 1018 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 CCDC190Q86UF4 302 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 SIRT6Q8N6T7 355 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 ZDHHC1Q8WTX9 485 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 ASB15Q8WXK1 588 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 UFD1Q92890 307 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 ZNF350Q9GZX5 532 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 ISG20L2Q9H9L3 353 aaKnown RBP9.6□□□□□ -0.87
LIMA1-201ENST00000341247 PTGFRNQ9P2B2 879 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 FBXL4Q9UKA2 621 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 DTX4Q9Y2E6 619 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 CLCA3PQ9Y6N3 262 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 TRIOBPQ9H2D6 2365 aa9.6□□□□□ -0.87
LIMA1-201ENST00000341247 A0A1W2PQL4 384 aaPredicted RBP9.59□□□□□ -0.87
LIMA1-201ENST00000341247 AQP9O43315 295 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 GMFGO60234 142 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 ADAM11O75078 769 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 OR5F1O95221 314 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 HOXC4P09017 264 aaPredicted RBP9.59□□□□□ -0.87
LIMA1-201ENST00000341247 MSL3P1P0C860 447 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 POU6F2P78424 691 aaPredicted RBP9.59□□□□□ -0.87
LIMA1-201ENST00000341247 BAK1Q16611 211 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 CXXC5Q7LFL8 322 aaKnown RBP9.59□□□□□ -0.87
LIMA1-201ENST00000341247 ZNF655Q8N720 491 aaPredicted RBP9.59□□□□□ -0.87
LIMA1-201ENST00000341247 GATSQ8NAP1 163 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 GPBAR1Q8TDU6 330 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 TMEM239Q8WW34 195 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 DIRAS2Q96HU8 199 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 NEDD4LQ96PU5 975 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 PRSS27Q9BQR3 290 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 YIPF2Q9BWQ6 316 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 SIDT1Q9NXL6 827 aaKnown RBP9.59□□□□□ -0.87
LIMA1-201ENST00000341247 IL20Q9NYY1 176 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 TRAPPC13A5PLN9 417 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 UNC119BA6NIH7 251 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 LRRN3E7EW58 273 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 PRAMEF26H0Y7S4 382 aa9.59□□□□□ -0.87
LIMA1-201ENST00000341247 CASKO14936 926 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms