RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 OR5W2Q8NH69 310 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 PMM1Q92871 262 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 B3GNT2Q9NY97 397 aa14.45□□□□□ -0.1
SHH-201ENST00000297261 FBXO45P0C2W1 286 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 HYAL4Q2M3T9 481 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 C1orf53Q5VUE5 145 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 METTL2BQ6P1Q9 378 aaKnown RBP14.44□□□□□ -0.1
SHH-201ENST00000297261 GTPBP8Q8N3Z3 284 aaPredicted RBP14.44□□□□□ -0.1
SHH-201ENST00000297261 FBXO15Q8NCQ5 510 aaPredicted RBP14.44□□□□□ -0.1
SHH-201ENST00000297261 ZFAND1Q8TCF1 268 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 SRMSQ9H3Y6 488 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 COLEC10Q9Y6Z7 277 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 SC5DO75845 299 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 C1SP09871 688 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 UCHL1P09936 223 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 ART1P52961 327 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 ACTC1P68032 377 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 ACTA1P68133 377 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 HNRNPA1L2Q32P51 320 aaKnown RBP14.44□□□□□ -0.1
SHH-201ENST00000297261 SLX4IPQ5VYV7 408 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 MFSD4AQ8N468 514 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 OR56A3Q8NH54 315 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 DPH1Q9BZG8 443 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 EGLN3Q9H6Z9 239 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 CARS2Q9HA77 564 aaKnown RBP14.44□□□□□ -0.1
SHH-201ENST00000297261 RBM7Q9Y580 266 aaKnown RBP14.44□□□□□ -0.1
SHH-201ENST00000297261 TDRD15B5MCY1 1934 aaKnown RBP14.44□□□□□ -0.1
SHH-201ENST00000297261 RFXAPO00287 272 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 TP53P04637 393 aaPredicted RBP14.44□□□□□ -0.1
SHH-201ENST00000297261 AGTR1P30556 359 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 MMP12P39900 470 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 KIAA1024LP59773 190 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 SLC16A12Q6ZSM3 486 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 OR52E2Q8NGJ4 325 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 HMGCLL1Q8TB92 370 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 SLC6A7Q99884 636 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 SRA1Q9HD15 236 aaKnown RBP14.44□□□□□ -0.1
SHH-201ENST00000297261 CHMP1AQ9HD42 196 aaPredicted RBP14.44□□□□□ -0.1
SHH-201ENST00000297261 VNN3Q9NY84 501 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 LAMP5Q9UJQ1 280 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 MEMO1Q9Y316 297 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 TRPM7Q96QT4 1865 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 CEP290O15078 2479 aa14.44□□□□□ -0.1
SHH-201ENST00000297261 SPAG17Q6Q759 2223 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 HYKKA2RU49 373 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 IGLON5A6NGN9 336 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 IGHA2P01877 340 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 GPX2P18283 190 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 MC2RQ01718 297 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 PRSS36Q5K4E3 855 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 COX20Q5RI15 118 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 SIGIRRQ6IA17 410 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 PAQR6Q6TCH4 344 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 NEK7Q8TDX7 302 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 TM9SF4Q92544 642 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 PDLIM5Q96HC4 596 aaKnown RBP14.43□□□□□ -0.1
SHH-201ENST00000297261 SLC25A18Q9H1K4 315 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 GDE1Q9NZC3 331 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 TRAV18A0A075B6X5 111 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 ZNF780AO75290 641 aaPredicted RBP14.43□□□□□ -0.1
SHH-201ENST00000297261 GYPBP06028 91 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 TRAPPC2P0DI81 140 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 TRAPPC2BP0DI82 140 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 HSD17B2P37059 387 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 AQP2P41181 271 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 CBX5P45973 191 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 CLCN7P51798 805 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 RAB2AP61019 212 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 ENPP2Q13822 863 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 GK2Q14410 553 aaPredicted RBP14.43□□□□□ -0.1
SHH-201ENST00000297261 SYPL1Q16563 259 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 PCGF3Q3KNV8 242 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 LIPIQ6XZB0 460 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 NR4A3Q92570 626 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 ZMYND19Q96E35 227 aaPredicted RBP14.43□□□□□ -0.1
SHH-201ENST00000297261 FOSL2P15408 326 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 AOAHP28039 575 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 BAIAP2L2Q6UXY1 529 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 UNC5DQ6UXZ4 953 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 TRIM46Q7Z4K8 759 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 TMEM121BQ9BXQ6 578 aaPredicted RBP14.43□□□□□ -0.1
SHH-201ENST00000297261 ABCG4Q9H172 646 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 AP1M2Q9Y6Q5 423 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 TET1Q8NFU7 2136 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 EIF4EBP2Q13542 120 aaPredicted RBP14.43□□□□□ -0.1
SHH-201ENST00000297261 KRBOX4Q5JUW0 171 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 ENPP7Q6UWV6 458 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 PRSS58Q8IYP2 241 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 RBPMSQ93062 196 aaKnown RBP14.43□□□□□ -0.1
SHH-201ENST00000297261 GAS2L1Q99501 681 aaPredicted RBP14.43□□□□□ -0.1
SHH-201ENST00000297261 ALOXE3Q9BYJ1 711 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 GSX2Q9BZM3 304 aa14.43□□□□□ -0.1
SHH-201ENST00000297261 MEIS3P1A6NDR6 274 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 LNX2Q8N448 690 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 IL17RDQ8NFM7 739 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 BABAM2Q9NXR7 383 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 GLS2Q9UI32 602 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 LIPT1Q9Y234 373 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 CLDN4O14493 209 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 APOC1P02654 83 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms