RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 MAPK11Q15759 364 aa12.12□□□□□ -0.47
VPS28-201ENST00000292510 NHSL2Q5HYW2 709 aa12.12□□□□□ -0.47
VPS28-201ENST00000292510 LRIF1Q5T3J3 769 aa12.12□□□□□ -0.47
VPS28-201ENST00000292510 RAET1LQ5VY80 246 aa12.12□□□□□ -0.47
VPS28-201ENST00000292510 VASNQ6EMK4 673 aa12.12□□□□□ -0.47
VPS28-201ENST00000292510 RTL6Q6ICC9 239 aa12.12□□□□□ -0.47
VPS28-201ENST00000292510 CBLN3Q6UW01 205 aa12.12□□□□□ -0.47
VPS28-201ENST00000292510 ARSKQ6UWY0 536 aa12.12□□□□□ -0.47
VPS28-201ENST00000292510 RETREG3Q86VR2 466 aa12.12□□□□□ -0.47
VPS28-201ENST00000292510 ZNF527Q8NB42 609 aa12.12□□□□□ -0.47
VPS28-201ENST00000292510 ZG16BQ96DA0 208 aa12.12□□□□□ -0.47
VPS28-201ENST00000292510 ARSGQ96EG1 525 aa12.12□□□□□ -0.47
VPS28-201ENST00000292510 C1GALT1C1Q96EU7 318 aa12.12□□□□□ -0.47
VPS28-201ENST00000292510 SFXN2Q96NB2 322 aa12.12□□□□□ -0.47
VPS28-201ENST00000292510 DMRTA2Q96SC8 542 aa12.12□□□□□ -0.47
VPS28-201ENST00000292510 NPAS1Q99742 590 aa12.12□□□□□ -0.47
VPS28-201ENST00000292510 NMUR2Q9GZQ4 415 aa12.12□□□□□ -0.47
VPS28-201ENST00000292510 FAM107BQ9H098 131 aa12.12□□□□□ -0.47
VPS28-201ENST00000292510 QRSL1Q9H0R6 528 aaKnown RBP12.12□□□□□ -0.47
VPS28-201ENST00000292510 RUBCNLQ9H714 662 aa12.12□□□□□ -0.47
VPS28-201ENST00000292510 PTGES2Q9H7Z7 377 aa12.12□□□□□ -0.47
VPS28-201ENST00000292510 SAR1AQ9NR31 198 aa12.12□□□□□ -0.47
VPS28-201ENST00000292510 VAPAQ9P0L0 249 aa12.12□□□□□ -0.47
VPS28-201ENST00000292510 SUCOQ9UBS9 1254 aaKnown RBP12.12□□□□□ -0.47
VPS28-201ENST00000292510 CAMK2AQ9UQM7 478 aa12.12□□□□□ -0.47
VPS28-201ENST00000292510 VDAC3Q9Y277 283 aa12.12□□□□□ -0.47
VPS28-201ENST00000292510 CARD8Q9Y2G2 431 aa12.12□□□□□ -0.47
VPS28-201ENST00000292510 WDR45Q9Y484 360 aa12.12□□□□□ -0.47
VPS28-201ENST00000292510 DTNAQ9Y4J8 743 aa12.12□□□□□ -0.47
VPS28-201ENST00000292510 FAM215AQ9Y5M1 114 aa12.12□□□□□ -0.47
VPS28-201ENST00000292510 PCNX1Q96RV3 2341 aa12.12□□□□□ -0.47
VPS28-201ENST00000292510 TRBV5-3A0A0A0MS03 114 aa12.11□□□□□ -0.47
VPS28-201ENST00000292510 A1L4Q6 167 aa12.11□□□□□ -0.47
VPS28-201ENST00000292510 SERINC4A6NH21 518 aa12.11□□□□□ -0.47
VPS28-201ENST00000292510 FIGNL2A6NMB9 653 aa12.11□□□□□ -0.47
VPS28-201ENST00000292510 KDM4EB2RXH2 506 aaPredicted RBP12.11□□□□□ -0.47
VPS28-201ENST00000292510 E9PLN8 166 aa12.11□□□□□ -0.47
VPS28-201ENST00000292510 ANGPT2O15123 496 aa12.11□□□□□ -0.47
VPS28-201ENST00000292510 ACVR2AP27037 513 aa12.11□□□□□ -0.47
VPS28-201ENST00000292510 LSP1P33241 339 aa12.11□□□□□ -0.47
VPS28-201ENST00000292510 ANXA11P50995 505 aaKnown RBP12.11□□□□□ -0.47
VPS28-201ENST00000292510 PER3P56645 1201 aa12.11□□□□□ -0.47
VPS28-201ENST00000292510 DSTNP60981 165 aa12.11□□□□□ -0.47
VPS28-201ENST00000292510 HPCAP84074 193 aa12.11□□□□□ -0.47
VPS28-201ENST00000292510 KLF10Q13118 480 aa12.11□□□□□ -0.47
VPS28-201ENST00000292510 RGNQ15493 299 aa12.11□□□□□ -0.47
VPS28-201ENST00000292510 ZNF141Q15928 474 aa12.11□□□□□ -0.47
VPS28-201ENST00000292510 DLEU7Q6UYE1 221 aa12.11□□□□□ -0.47
VPS28-201ENST00000292510 MISPQ8IVT2 679 aa12.11□□□□□ -0.47
VPS28-201ENST00000292510 ULK2Q8IYT8 1036 aa12.11□□□□□ -0.47
VPS28-201ENST00000292510 ZNF619Q8N2I2 560 aa12.11□□□□□ -0.47
VPS28-201ENST00000292510 C10orf111Q8N326 155 aa12.11□□□□□ -0.47
VPS28-201ENST00000292510 B4GALNT2Q8NHY0 566 aa12.11□□□□□ -0.47
VPS28-201ENST00000292510 WDYHV1Q96HA8 205 aa12.11□□□□□ -0.47
VPS28-201ENST00000292510 ELAC2Q9BQ52 826 aaKnown RBP12.11□□□□□ -0.47
VPS28-201ENST00000292510 VKORC1Q9BQB6 163 aa12.11□□□□□ -0.47
VPS28-201ENST00000292510 TRIM8Q9BZR9 551 aa12.11□□□□□ -0.47
VPS28-201ENST00000292510 PRDM14Q9GZV8 571 aa12.11□□□□□ -0.47
VPS28-201ENST00000292510 SAP130Q9H0E3 1048 aa12.11□□□□□ -0.47
VPS28-201ENST00000292510 SLC38A1Q9H2H9 487 aa12.11□□□□□ -0.47
VPS28-201ENST00000292510 IKZF5Q9H5V7 419 aa12.11□□□□□ -0.47
VPS28-201ENST00000292510 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.11□□□□□ -0.47
VPS28-201ENST00000292510 LEF1Q9UJU2 399 aaPredicted RBP12.11□□□□□ -0.47
VPS28-201ENST00000292510 NDUFAF1Q9Y375 327 aa12.11□□□□□ -0.47
VPS28-201ENST00000292510 MRPS18CQ9Y3D5 142 aaKnown RBP12.11□□□□□ -0.47
VPS28-201ENST00000292510 OR2M5A3KFT3 312 aa12.1□□□□□ -0.47
VPS28-201ENST00000292510 CLDN24A6NM45 220 aa12.1□□□□□ -0.47
VPS28-201ENST00000292510 H3BNH8 94 aa12.1□□□□□ -0.47
VPS28-201ENST00000292510 GTPBP1O00178 669 aaKnown RBP12.1□□□□□ -0.47
VPS28-201ENST00000292510 FBP2O00757 339 aa12.1□□□□□ -0.47
VPS28-201ENST00000292510 BCAS1O75363 584 aaPredicted RBP12.1□□□□□ -0.47
VPS28-201ENST00000292510 ACTL6AO96019 429 aa12.1□□□□□ -0.47
VPS28-201ENST00000292510 BCHEP06276 602 aa12.1□□□□□ -0.47
VPS28-201ENST00000292510 SNRPB2P08579 225 aaKnown RBP12.1□□□□□ -0.47
VPS28-201ENST00000292510 NR2F1P10589 423 aa12.1□□□□□ -0.47
VPS28-201ENST00000292510 DRD4P21917 467 aa12.1□□□□□ -0.47
VPS28-201ENST00000292510 MSX1P28360 303 aa12.1□□□□□ -0.47
VPS28-201ENST00000292510 GNGT1P63211 74 aa12.1□□□□□ -0.47
VPS28-201ENST00000292510 TXNL4AP83876 142 aaKnown RBP12.1□□□□□ -0.47
VPS28-201ENST00000292510 SRYQ05066 204 aa12.1□□□□□ -0.47
VPS28-201ENST00000292510 GANABQ14697 944 aaKnown RBP12.1□□□□□ -0.47
VPS28-201ENST00000292510 ZNF630Q2M218 657 aaPredicted RBP12.1□□□□□ -0.47
VPS28-201ENST00000292510 RPS26P11Q5JNZ5 115 aaPredicted RBP12.1□□□□□ -0.47
VPS28-201ENST00000292510 C1orf185Q5T7R7 199 aa12.1□□□□□ -0.47
VPS28-201ENST00000292510 RPTNQ6XPR3 784 aa12.1□□□□□ -0.47
VPS28-201ENST00000292510 LRRC74BQ6ZQY2 392 aa12.1□□□□□ -0.47
VPS28-201ENST00000292510 SPATA21Q7Z572 469 aa12.1□□□□□ -0.47
VPS28-201ENST00000292510 MTERF4Q7Z6M4 381 aaKnown RBP12.1□□□□□ -0.47
VPS28-201ENST00000292510 DHDDSQ86SQ9 333 aa12.1□□□□□ -0.47
VPS28-201ENST00000292510 TMCO5AQ8N6Q1 288 aa12.1□□□□□ -0.47
VPS28-201ENST00000292510 ITLN2Q8WWU7 325 aaPredicted RBP12.1□□□□□ -0.47
VPS28-201ENST00000292510 MAL2Q969L2 176 aa12.1□□□□□ -0.47
VPS28-201ENST00000292510 ZNF524Q96C55 264 aa12.1□□□□□ -0.47
VPS28-201ENST00000292510 DTNBP1Q96EV8 351 aa12.1□□□□□ -0.47
VPS28-201ENST00000292510 PSMG3-AS1Q96PY0 264 aa12.1□□□□□ -0.47
VPS28-201ENST00000292510 TRNT1Q96Q11 434 aaKnown RBP12.1□□□□□ -0.47
VPS28-201ENST00000292510 POLE3Q9NRF9 147 aa12.1□□□□□ -0.47
VPS28-201ENST00000292510 MED17Q9NVC6 651 aa12.1□□□□□ -0.47
VPS28-201ENST00000292510 ARMCX1Q9P291 453 aa12.1□□□□□ -0.47
VPS28-201ENST00000292510 P2RX2Q9UBL9 471 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms