RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 IRGMA1A4Y4 181 aa18.63■□□□□ 0.57
VPS53-201ENST00000291074 CDHR4A6H8M9 788 aa18.63■□□□□ 0.57
VPS53-201ENST00000291074 FABP5Q01469 135 aa18.63■□□□□ 0.57
VPS53-201ENST00000291074 RUNX1T1Q06455 604 aa18.63■□□□□ 0.57
VPS53-201ENST00000291074 TPBGQ13641 420 aa18.63■□□□□ 0.57
VPS53-201ENST00000291074 SMARCD3Q6STE5 483 aa18.63■□□□□ 0.57
VPS53-201ENST00000291074 OR52D1Q9H346 318 aa18.63■□□□□ 0.57
VPS53-201ENST00000291074 DUSP22Q9NRW4 184 aa18.63■□□□□ 0.57
VPS53-201ENST00000291074 ZNF223Q9UK11 482 aaPredicted RBP18.63■□□□□ 0.57
VPS53-201ENST00000291074 A0A087WV62 115 aa18.62■□□□□ 0.57
VPS53-201ENST00000291074 PRAMEF26H0Y7S4 382 aa18.62■□□□□ 0.57
VPS53-201ENST00000291074 LYPD3O95274 346 aa18.62■□□□□ 0.57
VPS53-201ENST00000291074 IFI30P13284 250 aa18.62■□□□□ 0.57
VPS53-201ENST00000291074 CAV3P56539 151 aa18.62■□□□□ 0.57
VPS53-201ENST00000291074 ZNF155Q12901 538 aaPredicted RBP18.62■□□□□ 0.57
VPS53-201ENST00000291074 MADCAM1Q13477 382 aa18.62■□□□□ 0.57
VPS53-201ENST00000291074 CCINQ13939 588 aa18.62■□□□□ 0.57
VPS53-201ENST00000291074 ZNF79Q15937 498 aa18.62■□□□□ 0.57
VPS53-201ENST00000291074 SLC35F1Q5T1Q4 408 aa18.62■□□□□ 0.57
VPS53-201ENST00000291074 CCBE1Q6UXH8 406 aaPredicted RBP18.62■□□□□ 0.57
VPS53-201ENST00000291074 TMPRSS11AQ6ZMR5 421 aa18.62■□□□□ 0.57
VPS53-201ENST00000291074 ZNF655Q8N720 491 aaPredicted RBP18.62■□□□□ 0.57
VPS53-201ENST00000291074 ZNF614Q8N883 585 aa18.62■□□□□ 0.57
VPS53-201ENST00000291074 RFKQ969G6 155 aa18.62■□□□□ 0.57
VPS53-201ENST00000291074 NACC2Q96BF6 587 aa18.62■□□□□ 0.57
VPS53-201ENST00000291074 TOE1Q96GM8 510 aaKnown RBP18.62■□□□□ 0.57
VPS53-201ENST00000291074 NDRG2Q9UN36 371 aaKnown RBP18.62■□□□□ 0.57
VPS53-201ENST00000291074 C2CD4DB7Z1M9 353 aa18.62■□□□□ 0.57
VPS53-201ENST00000291074 STK25O00506 426 aa18.62■□□□□ 0.57
VPS53-201ENST00000291074 THEGLP0DJG4 465 aa18.62■□□□□ 0.57
VPS53-201ENST00000291074 FZD2Q14332 565 aa18.62■□□□□ 0.57
VPS53-201ENST00000291074 NCCRP1Q6ZVX7 275 aaPredicted RBP18.62■□□□□ 0.57
VPS53-201ENST00000291074 SLC44A3Q8N4M1 653 aa18.62■□□□□ 0.57
VPS53-201ENST00000291074 SIRT6Q8N6T7 355 aa18.62■□□□□ 0.57
VPS53-201ENST00000291074 SMRP1Q8NCR6 262 aa18.62■□□□□ 0.57
VPS53-201ENST00000291074 FANK1Q8TC84 345 aa18.62■□□□□ 0.57
VPS53-201ENST00000291074 C8orf33Q9H7E9 229 aaPredicted RBP18.62■□□□□ 0.57
VPS53-201ENST00000291074 USP36Q9P275 1121 aaKnown RBP18.62■□□□□ 0.57
VPS53-201ENST00000291074 PLEKHB1Q9UF11 243 aaPredicted RBP18.62■□□□□ 0.57
VPS53-201ENST00000291074 SATB2Q9UPW6 733 aa18.62■□□□□ 0.57
VPS53-201ENST00000291074 UNC119BA6NIH7 251 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 H3BQ06 376 aaPredicted RBP18.61■□□□□ 0.57
VPS53-201ENST00000291074 HHEXQ03014 270 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 INSL4Q14641 139 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 PLBD1Q6P4A8 553 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 QSOX2Q6ZRP7 698 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 CELF2-AS1Q8N7Q2 184 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 OR52R1Q8NGF1 315 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 TMEM239Q8WW34 195 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 KCTD7Q96MP8 289 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 ZNF649Q9BS31 505 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 TEX12Q9BXU0 123 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 ABCB9Q9NP78 766 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 PRDM9Q9NQV7 894 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 SIDT1Q9NXL6 827 aaKnown RBP18.61■□□□□ 0.57
VPS53-201ENST00000291074 TBC1D24Q9ULP9 559 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 OR5K3A6NET4 321 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 B4DGG1 531 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 SLC30A4O14863 429 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 SNX4O95219 450 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 CBX7O95931 251 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 IL1AP01583 271 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 ATP6V1E1P36543 226 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 TPTEP56180 551 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 POU6F2P78424 691 aaPredicted RBP18.61■□□□□ 0.57
VPS53-201ENST00000291074 CXXC5Q7LFL8 322 aaKnown RBP18.61■□□□□ 0.57
VPS53-201ENST00000291074 AVL9Q8NBF6 648 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 GRHL3Q8TE85 626 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 ITPKCQ96DU7 683 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 SECISBP2Q96T21 854 aaKnown RBP18.61■□□□□ 0.57
VPS53-201ENST00000291074 STACQ99469 402 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 GPR174Q9BXC1 333 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 MIXL1Q9H2W2 232 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 C2orf42Q9NWW7 574 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 CMAHPQ9Y471 501 aa18.61■□□□□ 0.57
VPS53-201ENST00000291074 SPTY2D1-AS1A0A0U1RR47 76 aa18.6■□□□□ 0.57
VPS53-201ENST00000291074 IQCMA0A1B0GVH7 501 aa18.6■□□□□ 0.57
VPS53-201ENST00000291074 CTSEP14091 401 aa18.6■□□□□ 0.57
VPS53-201ENST00000291074 MAP3K8P41279 467 aa18.6■□□□□ 0.57
VPS53-201ENST00000291074 LRIT3Q3SXY7 679 aa18.6■□□□□ 0.57
VPS53-201ENST00000291074 NXNL2Q5VZ03 156 aa18.6■□□□□ 0.57
VPS53-201ENST00000291074 TOR1AIP2Q8NFQ8 470 aa18.6■□□□□ 0.57
VPS53-201ENST00000291074 OR51G2Q8NGK0 314 aa18.6■□□□□ 0.57
VPS53-201ENST00000291074 OR13C2Q8NGS9 318 aa18.6■□□□□ 0.57
VPS53-201ENST00000291074 CCDC32Q9BV29 185 aa18.6■□□□□ 0.57
VPS53-201ENST00000291074 TMED9Q9BVK6 235 aa18.6■□□□□ 0.57
VPS53-201ENST00000291074 HCAR1Q9BXC0 346 aa18.6■□□□□ 0.57
VPS53-201ENST00000291074 WDR70Q9NW82 654 aa18.6■□□□□ 0.57
VPS53-201ENST00000291074 KIR2DS5A0A0G2JLQ3 304 aa18.6■□□□□ 0.57
VPS53-201ENST00000291074 A0A0G2JNG1 304 aa18.6■□□□□ 0.57
VPS53-201ENST00000291074 KIR2DS3K7RE56 304 aa18.6■□□□□ 0.57
VPS53-201ENST00000291074 SNPHO15079 494 aa18.6■□□□□ 0.57
VPS53-201ENST00000291074 CDC123O75794 336 aaPredicted RBP18.6■□□□□ 0.57
VPS53-201ENST00000291074 ATXN8OSP0DMR3 200 aa18.6■□□□□ 0.57
VPS53-201ENST00000291074 HTR1FP30939 366 aa18.6■□□□□ 0.57
VPS53-201ENST00000291074 KIR2DS5Q14953 304 aa18.6■□□□□ 0.57
VPS53-201ENST00000291074 BAK1Q16611 211 aa18.6■□□□□ 0.57
VPS53-201ENST00000291074 THSD4Q6ZMP0 1018 aa18.6■□□□□ 0.57
VPS53-201ENST00000291074 OOSP2Q86WS3 158 aa18.6■□□□□ 0.57
VPS53-201ENST00000291074 OR4N2Q8NGD1 307 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms