RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 MTHFD2LQ9H903 347 aaPredicted RBP11.6□□□□□ -0.55
SS18-202ENST00000269138 EFCAB1Q9HAE3 211 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 PLSCR2Q9NRY7 297 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 QPCTLQ9NXS2 382 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 TNFRSF10DQ9UBN6 386 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 USP22Q9UPT9 525 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 CARD8Q9Y2G2 431 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 NCKAP5O14513 1909 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 AGAP5A6NIR3 686 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 HCRTR2O43614 444 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 ZIC3O60481 467 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 IGHG3P01860 377 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 HPNP05981 417 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 ENDOUP21128 410 aaKnown RBP11.6□□□□□ -0.55
SS18-202ENST00000269138 SLC6A2P23975 617 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 NUDT2P50583 147 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 CRISP3P54108 245 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 CDK6Q00534 326 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 PLAURQ03405 335 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 ZNF117Q03924 483 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 CYP51A1Q16850 503 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 EIF2S3LQ2VIR3 472 aaKnown RBP11.6□□□□□ -0.55
SS18-202ENST00000269138 FAM91A1Q658Y4 838 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 CBLN3Q6UW01 205 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 ARSKQ6UWY0 536 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 ZZZ3Q8IYH5 903 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 GHDCQ8N2G8 530 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 OR8J3Q8NGG0 315 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 GPATCH1Q9BRR8 931 aaKnown RBP11.6□□□□□ -0.55
SS18-202ENST00000269138 RSPO3Q9BXY4 272 aaPredicted RBP11.6□□□□□ -0.55
SS18-202ENST00000269138 TMEM38AQ9H6F2 299 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 LDAHQ9H6V9 325 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 ACKR4Q9NPB9 350 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 CMTM6Q9NX76 183 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 GMPR2Q9P2T1 348 aaKnown RBP11.6□□□□□ -0.55
SS18-202ENST00000269138 SPRR3Q9UBC9 169 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 SLC6A5Q9Y345 797 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 L3MBTL1Q9Y468 752 aa11.6□□□□□ -0.55
SS18-202ENST00000269138 DSPPQ9NZW4 1301 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 TRGV5A0A0B4J1U4 118 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 A0A0G2JPF8 293 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 TMEM247A6NEH6 219 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 HNRNPCL2B2RXH8 293 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 HNRNPCL3B7ZW38 293 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 C5orf58C9J3I9 102 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 H3BNH8 94 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 GTPBP1O00178 669 aaKnown RBP11.59□□□□□ -0.55
SS18-202ENST00000269138 HNRNPCL1O60812 293 aaKnown RBP11.59□□□□□ -0.55
SS18-202ENST00000269138 PGM3O95394 542 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 HNRNPCL4P0DMR1 293 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 RPS4Y1P22090 263 aaKnown RBP11.59□□□□□ -0.55
SS18-202ENST00000269138 DPP4P27487 766 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 SRD5A2P31213 254 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 ART3Q13508 389 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 SCARB2Q14108 478 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 FGFBP1Q14512 234 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 C8orf82Q6P1X6 216 aaPredicted RBP11.59□□□□□ -0.55
SS18-202ENST00000269138 NET1Q7Z628 596 aaPredicted RBP11.59□□□□□ -0.55
SS18-202ENST00000269138 MTERF4Q7Z6M4 381 aaKnown RBP11.59□□□□□ -0.55
SS18-202ENST00000269138 ATCAYQ86WG3 371 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 CALHM3Q86XJ0 350 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 VRK2Q86Y07 508 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 MISPQ8IVT2 679 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 OR5M1Q8NGP8 315 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 B4GALNT2Q8NHY0 566 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 FBXO27Q8NI29 283 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 CNOT9Q92600 299 aaKnown RBP11.59□□□□□ -0.55
SS18-202ENST00000269138 ZNF524Q96C55 264 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 C1GALT1C1Q96EU7 318 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 OR2B2Q9GZK3 357 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 EXO5Q9H790 373 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 BCL2L10Q9HD36 194 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 TAS2R10Q9NYW0 307 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 CALML5Q9NZT1 146 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 TAGLN3Q9UI15 199 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 DKKL1Q9UK85 242 aa11.59□□□□□ -0.55
SS18-202ENST00000269138 RPH3AQ9Y2J0 694 aaPredicted RBP11.59□□□□□ -0.55
SS18-202ENST00000269138 A0A1B0GVC2 190 aa11.58□□□□□ -0.56
SS18-202ENST00000269138 CCT8L1PA6NM43 557 aa11.58□□□□□ -0.56
SS18-202ENST00000269138 SHISA8B8ZZ34 492 aa11.58□□□□□ -0.56
SS18-202ENST00000269138 J3QKU1 62 aa11.58□□□□□ -0.56
SS18-202ENST00000269138 GCM2O75603 506 aaPredicted RBP11.58□□□□□ -0.56
SS18-202ENST00000269138 CYP7B1O75881 506 aa11.58□□□□□ -0.56
SS18-202ENST00000269138 CSTAP01040 98 aa11.58□□□□□ -0.56
SS18-202ENST00000269138 UBTFL6P0CB48 400 aaPredicted RBP11.58□□□□□ -0.56
SS18-202ENST00000269138 UBL4AP11441 157 aa11.58□□□□□ -0.56
SS18-202ENST00000269138 AQP1P29972 269 aa11.58□□□□□ -0.56
SS18-202ENST00000269138 PGM1P36871 562 aa11.58□□□□□ -0.56
SS18-202ENST00000269138 ADH7P40394 386 aa11.58□□□□□ -0.56
SS18-202ENST00000269138 DSCR4P56555 118 aaPredicted RBP11.58□□□□□ -0.56
SS18-202ENST00000269138 KCNJ10P78508 379 aa11.58□□□□□ -0.56
SS18-202ENST00000269138 ELOAQ14241 798 aaKnown RBP11.58□□□□□ -0.56
SS18-202ENST00000269138 GNA13Q14344 377 aa11.58□□□□□ -0.56
SS18-202ENST00000269138 ZNF630Q2M218 657 aaPredicted RBP11.58□□□□□ -0.56
SS18-202ENST00000269138 REEP3Q6NUK4 255 aa11.58□□□□□ -0.56
SS18-202ENST00000269138 HACD2Q6Y1H2 254 aa11.58□□□□□ -0.56
SS18-202ENST00000269138 EIF3MQ7L2H7 374 aaKnown RBP11.58□□□□□ -0.56
SS18-202ENST00000269138 SLC15A3Q8IY34 581 aa11.58□□□□□ -0.56
SS18-202ENST00000269138 PEX5LQ8IYB4 626 aa11.58□□□□□ -0.56
SS18-202ENST00000269138 OR52P1PQ8NH57 321 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms