RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 AKT1S1Q96B36 256 aa13.21□□□□□ -0.3
CCDC88A-201ENST00000263630 OR6C2Q9NZP2 312 aa13.21□□□□□ -0.3
CCDC88A-201ENST00000263630 SSUH2Q9Y2M2 353 aa13.21□□□□□ -0.3
CCDC88A-201ENST00000263630 ICE1Q9Y2F5 2266 aa13.21□□□□□ -0.3
CCDC88A-201ENST00000263630 CDC123O75794 336 aaPredicted RBP13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 KLRK1P26718 216 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 GJA5P36382 358 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 ZMAT1Q5H9K5 638 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 TRNP1Q6NT89 227 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 MUL1Q969V5 352 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 FCRL3Q96P31 734 aaPredicted RBP13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 MADDQ8WXG6 1647 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 TTC24A2A3L6 582 aaPredicted RBP13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 CT45A10P0DMU9 189 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 PRKACGP22612 351 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 IL2RGP31785 369 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 RAP2BP61225 183 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 KCNAB2Q13303 367 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 IL20RBQ6UXL0 311 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 MKXQ8IYA7 352 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 OR13C4Q8NGS5 318 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 OR13J1Q8NGT2 312 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 NDFIP1Q9BT67 221 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 CEPT1Q9Y6K0 416 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 PPP3CBP16298 524 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 TMEM107Q6UX40 140 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 HAS1Q92839 578 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 GNB4Q9HAV0 340 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 GALPQ9UBC7 116 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 OR1A2Q9Y585 309 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 OR4Q2P0C623 313 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 CDK4P11802 303 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 PTNP21246 168 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 GMPRP36959 345 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 CXCL9Q07325 125 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 MCATQ8IVS2 390 aaKnown RBP13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 LINC01599Q8WXQ3 324 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 ZCCHC4Q9H5U6 513 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 DTYMKP23919 212 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 DMWDQ09019 674 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 ZNF836Q6ZNA1 936 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 OR11L1Q8NGX0 322 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 HERPUD2Q9BSE4 406 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 GOLGA2P5Q9HBQ8 144 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 PRDM9Q9NQV7 894 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 TMEM181Q9P2C4 612 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 NCOA3Q9Y6Q9 1424 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 STT3AP46977 705 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 CTXN1P60606 82 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 CYP1B1Q16678 543 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 OR52E8Q6IFG1 317 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 DTX3Q8N9I9 347 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 OR13C9Q8NGT0 318 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 RAB8BQ92930 207 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 ARV1Q9H2C2 271 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 CHRDQ9H2X0 955 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 SH3BGRL2Q9UJC5 107 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 SLC22A7Q9Y694 548 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 TAL1P17542 331 aaPredicted RBP13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 PPP1R8Q12972 351 aaKnown RBP13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 RNLSQ5VYX0 342 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 TIGD3Q6B0B8 471 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 CD300LGQ6UXG3 332 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 OR8U1Q8NH10 309 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 GPR22Q99680 433 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 SLC35D1Q9NTN3 355 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 PCDHAC2Q9Y5I4 1007 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 TCAPO15273 167 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 STATHP02808 62 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 WNT4P56705 351 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 RANP62826 216 aaKnown RBP13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 BCORL1Q5H9F3 1711 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 WDR18Q9BV38 432 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 SEMA4CQ9C0C4 833 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 PDZD7Q9H5P4 517 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 SMOXQ9NWM0 555 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 PTTG3PQ9NZH4 202 aa13.2□□□□□ -0.3
CCDC88A-201ENST00000263630 F5H5K5 113 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 EEDO75530 441 aaKnown RBP13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 SLC35A2P78381 396 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 SOHLH1Q5JUK2 328 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 OR10K2Q6IF99 312 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 KDM8Q8N371 416 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 ZNF486Q96H40 463 aaPredicted RBP13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 PLAGL1Q9UM63 463 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 ADGRB3O60242 1522 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 NCBP2LA6PVI3 153 aaKnown RBP13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 DENRO43583 198 aaKnown RBP13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 EGFP01133 1207 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 MT-ND4LP03901 98 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 PROZP22891 400 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 HOXA11P31270 313 aaPredicted RBP13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 ID2Q02363 134 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 CNIH2Q6PI25 160 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 BTNL8Q6UX41 500 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 SSX7Q7RTT5 188 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 MCOLN1Q9GZU1 580 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 RCCD1A6NED2 376 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 J3KR12 359 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms