RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 ANAPC7Q9UJX3 599 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 CCL27Q9Y4X3 112 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 ABCC11Q96J66 1382 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 A0A1W2PQU0 124 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 GNGT2O14610 69 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 SEPT4O43236 478 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 LRCH4O75427 683 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 MMP7P09237 267 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 CETPP11597 493 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 NOVA1P51513 510 aaKnown RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 UCP2P55851 309 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 IL11RAQ14626 422 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 PIGGQ5H8A4 983 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 ELP2Q6IA86 826 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 FAM198BQ6UWH4 519 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 C2orf73Q8N5S3 287 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 FAM24BQ8N5W8 94 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF610Q8N9Z0 462 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 HAVCR1Q96D42 359 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 SLC35A4Q96G79 324 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 SLC39A8Q9C0K1 460 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 DSN1Q9H410 356 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 UBE2ZQ9H832 354 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 MARCH4Q9P2E8 410 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 A0A1W2PQ45 241 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 A0A1W2PQY0 241 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 C2orf78A6NCI8 922 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 TRAPPC2LH3BP13 241 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 J3QR89 54 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 FCN1O00602 326 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 KCNK2O95069 426 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 NTSR2O95665 410 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 HAND1O96004 215 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 ANXA4P09525 319 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 CYP7A1P22680 504 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 CD200P41217 278 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 SRP9P49458 86 aaKnown RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 CYBRD1Q53TN4 286 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 XKR7Q5GH72 579 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 ARL13AQ5H913 290 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 IDNKQ5T6J7 187 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 TMEM236Q5W0B7 351 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 DET1Q7L5Y6 550 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 WFDC8Q8IUA0 241 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 HORMAD2Q8N7B1 307 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 C11orf44Q8N8P7 122 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 MSTO1Q9BUK6 570 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 TBL1XR1Q9BZK7 514 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 ACSS2Q9NR19 701 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 TRAPPC2LQ9UL33 140 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 AATKQ6ZMQ8 1374 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 C9JVG2 144 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 EREGO14944 169 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 MBL2P11226 248 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 S1PR1P21453 382 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 FPR1P21462 350 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 LGALS4P56470 323 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 SELENBP1Q13228 472 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 PNLIPRP3Q17RR3 467 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 FAM74A1Q5RGS3 127 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 FAM102AQ5T9C2 384 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 FIGNL1Q6PIW4 674 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 LHFPL4Q7Z7J7 247 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 RDH10Q8IZV5 341 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 ZSCAN4Q8NAM6 433 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 TMEM116Q8NCL8 245 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 OR4F15Q8NGB8 312 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 ABHD3Q8WU67 409 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 DAZLQ92904 295 aaKnown RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 HPDLQ96IR7 371 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF75AQ96N20 296 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 SLC38A3Q99624 504 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 DNAJC4Q9NNZ3 241 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 OXSMQ9NWU1 459 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 CLN6Q9NWW5 311 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 FAM206AQ9NX38 181 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 KIF25Q9UIL4 384 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 IKZF3Q9UKT9 509 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 OR52A4PA6NMU1 304 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 J3KTA2 159 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 AIREO43918 545 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 OR12D1P0DN82 309 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 FABP4P15090 132 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF182P17025 639 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 IMPDH1P20839 514 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 GPR12P47775 334 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 TTPAP49638 278 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 CCR5P51681 352 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 SNU13P55769 128 aaKnown RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 MYL5Q02045 173 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 KIAA0141Q14154 515 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-221ENST00000641996 IZUMO4Q1ZYL8 232 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 COL5A1-AS1Q5SY13 56 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 OR4N2Q8NGD1 307 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 APH1BQ8WW43 257 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 SLC25A13Q9UJS0 675 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 LOC100509620A0A075B734 347 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 NKX6-3A6NJ46 265 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 SHISA8B8ZZ34 492 aa3.36□□□□□ -1.87
SCN1A-221ENST00000641996 G3V3Y1 287 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms