RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 PGM2Q96G03 612 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 MED30Q96HR3 178 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 OR52E6Q96RD3 313 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SLC38A1Q9H2H9 487 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 CHRDQ9H2X0 955 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ALG9Q9H6U8 611 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SLCO3A1Q9UIG8 710 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SSUH2Q9Y2M2 353 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 TET3O43151 1660 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 A0A1B0GVI7 797 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SLC31A1O15431 190 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SLC7A4O43246 635 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 TGOLN2O43493 480 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 YIF1AO95070 293 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 GLULP15104 373 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 XRCC1P18887 633 aaPredicted RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 TNFRSF1AP19438 455 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ANXA7P20073 488 aaKnown RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 BMPR1AP36894 532 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 RAG2P55895 527 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 UBE2MP61081 183 aaKnown RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ATP6V0D1P61421 351 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 FAAP100Q0VG06 881 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 BAMBIQ13145 260 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 PRDX4Q13162 271 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 OXA1LQ15070 435 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 CLEC2AQ6UVW9 174 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 TMCO2Q7Z6W1 182 aaPredicted RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 FAM217AQ8IXS0 508 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 C1orf174Q8IYL3 243 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 TSEN2Q8NCE0 465 aaKnown RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 OR1J4Q8NGS1 313 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 OR2A12Q8NGT7 310 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 IFI44Q8TCB0 444 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 IRGQQ8WZA9 623 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 S100A16Q96FQ6 103 aaKnown RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 BIRC8Q96P09 236 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 NTN4Q9HB63 628 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 INTS6Q9UL03 887 aaKnown RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 PPM1HQ9ULR3 514 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 FZD4Q9ULV1 537 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SLC35A3Q9Y2D2 325 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 MED16Q9Y2X0 877 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 YIPF1Q9Y548 306 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SERTM1A2A2V5 107 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 DNASE2O00115 360 aaPredicted RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 TNFRSF10AO00220 468 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 PER1O15534 1290 aaPredicted RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SEMG1P04279 462 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 STAG3L2P0CL84 134 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 GP1BBP13224 206 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 LPOP22079 712 aaPredicted RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 AHRP35869 848 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 TMPRSS3P57727 454 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 PJVKQ0ZLH3 352 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 AUHQ13825 339 aaKnown RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 TRAM1Q15629 374 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 OR5M10Q6IEU7 315 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 METAP1DQ6UB28 335 aaPredicted RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 NIPA1Q7RTP0 329 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 OR5M1Q8NGP8 315 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 MAP4K1Q92918 833 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 MRPL38Q96DV4 380 aaKnown RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 TRIB3Q96RU7 358 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 MACROD1Q9BQ69 325 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 UTP23Q9BRU9 249 aaKnown RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 MTG2Q9H4K7 406 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ZCCHC4Q9H5U6 513 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 TSC2P49815 1807 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 EEF1E1-BLOC1S5C9J1V9 151 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 LINC01387J3KSC0 135 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 EEF1E1O43324 174 aaKnown RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF16P17020 682 aaPredicted RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 MRPS21P82921 87 aaKnown RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 RELBQ01201 579 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 FMO1Q01740 532 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 HSPA14Q0VDF9 509 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 HES1Q14469 280 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 POU6F1Q14863 301 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 C5orf46Q6UWT4 87 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 CES3Q6UWW8 571 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 TMEM108Q6UXF1 575 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 LBX2Q6XYB7 198 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 NAGSQ8N159 534 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 OR14L1PQ8NHC6 308 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 CD200R1Q8TD46 325 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 PMEPA1Q969W9 287 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ERGIC2Q96RQ1 377 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 BEX2Q9BXY8 128 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ENKD1Q9H0I2 346 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SOX17Q9H6I2 414 aaPredicted RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 BEX1Q9HBH7 125 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ADAM29Q9UKF5 820 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 PADI1Q9ULC6 663 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 PCDHGA9Q9Y5G4 932 aaKnown RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 PTCH2Q9Y6C5 1203 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ADGRB3O60242 1522 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 NRXN1Q9ULB1 1477 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 CHADO15335 359 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 TGDSO95455 350 aa2.64□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms