RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 SAGE2PA6NJ88 616 aa15.56■□□□□ 0.08
CLN3-252ENST00000636907 OR6C76A6NM76 312 aa15.56■□□□□ 0.08
CLN3-252ENST00000636907 E9PQ18 207 aa15.56■□□□□ 0.08
CLN3-252ENST00000636907 IL33O95760 270 aa15.56■□□□□ 0.08
CLN3-252ENST00000636907 THY1P04216 161 aa15.56■□□□□ 0.08
CLN3-252ENST00000636907 SMIM18P0DKX4 95 aa15.56■□□□□ 0.08
CLN3-252ENST00000636907 PSMD4P55036 377 aaKnown RBP15.56■□□□□ 0.08
CLN3-252ENST00000636907 DCAF7P61962 342 aa15.56■□□□□ 0.08
CLN3-252ENST00000636907 ST3GAL3Q11203 375 aa15.56■□□□□ 0.08
CLN3-252ENST00000636907 IL18R1Q13478 541 aa15.56■□□□□ 0.08
CLN3-252ENST00000636907 RAPSNQ13702 412 aa15.56■□□□□ 0.08
CLN3-252ENST00000636907 KEAP1Q14145 624 aa15.56■□□□□ 0.08
CLN3-252ENST00000636907 FGFBP1Q14512 234 aa15.56■□□□□ 0.08
CLN3-252ENST00000636907 ISXQ2M1V0 245 aa15.56■□□□□ 0.08
CLN3-252ENST00000636907 CDCP2Q5VXM1 449 aa15.56■□□□□ 0.08
CLN3-252ENST00000636907 PGBD2Q6P3X8 592 aa15.56■□□□□ 0.08
CLN3-252ENST00000636907 FAM198BQ6UWH4 519 aa15.56■□□□□ 0.08
CLN3-252ENST00000636907 SLC29A4Q7RTT9 530 aa15.56■□□□□ 0.08
CLN3-252ENST00000636907 RANBP3LQ86VV4 465 aaPredicted RBP15.56■□□□□ 0.08
CLN3-252ENST00000636907 NFAM1Q8NET5 270 aaPredicted RBP15.56■□□□□ 0.08
CLN3-252ENST00000636907 WDR54Q9H977 334 aa15.56■□□□□ 0.08
CLN3-252ENST00000636907 ST6GALNAC1Q9NSC7 600 aaPredicted RBP15.56■□□□□ 0.08
CLN3-252ENST00000636907 TOR4AQ9NXH8 423 aa15.56■□□□□ 0.08
CLN3-252ENST00000636907 GPN3Q9UHW5 284 aaPredicted RBP15.56■□□□□ 0.08
CLN3-252ENST00000636907 CDC14CA4D256 554 aa15.55■□□□□ 0.08
CLN3-252ENST00000636907 OR5F1O95221 314 aa15.55■□□□□ 0.08
CLN3-252ENST00000636907 ADAP00813 363 aa15.55■□□□□ 0.08
CLN3-252ENST00000636907 HTR2AP28223 471 aa15.55■□□□□ 0.08
CLN3-252ENST00000636907 IFNA8P32881 189 aa15.55■□□□□ 0.08
CLN3-252ENST00000636907 LSM11P83369 360 aaKnown RBP eCLIP15.55■□□□□ 0.08
CLN3-252ENST00000636907 TRAM2Q15035 370 aa15.55■□□□□ 0.08
CLN3-252ENST00000636907 DCAF12Q5T6F0 453 aa15.55■□□□□ 0.08
CLN3-252ENST00000636907 HLA-DQA1Q5Y7H0 255 aa15.55■□□□□ 0.08
CLN3-252ENST00000636907 TMEM205Q6UW68 189 aa15.55■□□□□ 0.08
CLN3-252ENST00000636907 Q6ZPB1 254 aaPredicted RBP15.55■□□□□ 0.08
CLN3-252ENST00000636907 RAB11FIP2Q7L804 512 aa15.55■□□□□ 0.08
CLN3-252ENST00000636907 GDF7Q7Z4P5 450 aa15.55■□□□□ 0.08
CLN3-252ENST00000636907 PRR22Q8IZ63 422 aa15.55■□□□□ 0.08
CLN3-252ENST00000636907 GALNT6Q8NCL4 622 aa15.55■□□□□ 0.08
CLN3-252ENST00000636907 B3GNT7Q8NFL0 401 aa15.55■□□□□ 0.08
CLN3-252ENST00000636907 OR4C3Q8NH37 302 aa15.55■□□□□ 0.08
CLN3-252ENST00000636907 SLC41A3Q96GZ6 507 aa15.55■□□□□ 0.08
CLN3-252ENST00000636907 WDR77Q9BQA1 342 aaPredicted RBP15.55■□□□□ 0.08
CLN3-252ENST00000636907 ING2Q9H160 280 aa15.55■□□□□ 0.08
CLN3-252ENST00000636907 BATF3Q9NR55 127 aa15.55■□□□□ 0.08
CLN3-252ENST00000636907 FLRT3Q9NZU0 649 aa15.55■□□□□ 0.08
CLN3-252ENST00000636907 ZNF223Q9UK11 482 aaPredicted RBP15.55■□□□□ 0.08
CLN3-252ENST00000636907 NDRG4Q9ULP0 352 aaKnown RBP15.55■□□□□ 0.08
CLN3-252ENST00000636907 MGAT4BQ9UQ53 548 aa15.55■□□□□ 0.08
CLN3-252ENST00000636907 GMPPBQ9Y5P6 360 aa15.55■□□□□ 0.08
CLN3-252ENST00000636907 TMX2-CTNND1H3BSU7 103 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 CSO75390 466 aaKnown RBP15.54■□□□□ 0.08
CLN3-252ENST00000636907 NTN1O95631 604 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 TGM1P22735 817 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 ELK4P28324 431 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 NR0B1P51843 470 aaKnown RBP15.54■□□□□ 0.08
CLN3-252ENST00000636907 RAB15P59190 212 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 ISL1P61371 349 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 FAM69BQ5VUD6 431 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 PAPD4Q6PIY7 484 aaKnown RBP15.54■□□□□ 0.08
CLN3-252ENST00000636907 KLHL17Q6TDP4 642 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 ZNF517Q6ZMY9 492 aaPredicted RBP15.54■□□□□ 0.08
CLN3-252ENST00000636907 CPEB2Q7Z5Q1 589 aaKnown RBP15.54■□□□□ 0.08
CLN3-252ENST00000636907 SLCO6A1Q86UG4 719 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 GRAMD2AQ8IUY3 354 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 PARP8Q8N3A8 854 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 ZNF441Q8N8Z8 693 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 OR4K5Q8NGD3 323 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 SLC38A4Q969I6 547 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 C8orf44Q96CB5 159 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 ARSGQ96EG1 525 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 PITX2Q99697 317 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 SEMA4CQ9C0C4 833 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 ANKRD19PQ9H560 264 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 FAM86C1Q9NVL1 165 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 DNAJB12Q9NXW2 375 aaKnown RBP15.54■□□□□ 0.08
CLN3-252ENST00000636907 NXT1Q9UKK6 140 aaKnown RBP15.54■□□□□ 0.08
CLN3-252ENST00000636907 A0A087WUU8 490 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 TO15178 435 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 LRP3O75074 770 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 CYC1P08574 325 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 UGT2B15P54855 530 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 RPP38P78345 283 aaKnown RBP15.54■□□□□ 0.08
CLN3-252ENST00000636907 CD47Q08722 323 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 OR1Q1Q15612 314 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 MEP1AQ16819 746 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 CTU2Q2VPK5 515 aaKnown RBP15.54■□□□□ 0.08
CLN3-252ENST00000636907 NKAIN4Q8IVV8 208 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 LINC00471Q8N535 108 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 APCDD1LQ8NCL9 501 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 LIN37Q96GY3 246 aaPredicted RBP15.54■□□□□ 0.08
CLN3-252ENST00000636907 DGCR6LQ9BY27 220 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 POLR2J2Q9GZM3 115 aaKnown RBP15.54■□□□□ 0.08
CLN3-252ENST00000636907 POLR2J3Q9H1A7 115 aaKnown RBP15.54■□□□□ 0.08
CLN3-252ENST00000636907 EVA1AQ9H8M9 152 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 PISDQ9UG56 409 aa15.54■□□□□ 0.08
CLN3-252ENST00000636907 TESQ9UGI8 421 aaKnown RBP15.54■□□□□ 0.08
CLN3-252ENST00000636907 MRTO4Q9UKD2 239 aaKnown RBP15.54■□□□□ 0.08
CLN3-252ENST00000636907 PPIEQ9UNP9 301 aaKnown RBP15.54■□□□□ 0.08
CLN3-252ENST00000636907 PCDHGA1Q9Y5H4 931 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms