RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 NDUFB5O43674 189 aa16.49■□□□□ 0.23
CLN3-239ENST00000628023 PDE9AO76083 593 aa16.49■□□□□ 0.23
CLN3-239ENST00000628023 ANGPTL1O95841 491 aa16.49■□□□□ 0.23
CLN3-239ENST00000628023 NGFRP08138 427 aa16.49■□□□□ 0.23
CLN3-239ENST00000628023 NR2F1P10589 423 aa16.49■□□□□ 0.23
CLN3-239ENST00000628023 ETFAP13804 333 aa16.49■□□□□ 0.23
CLN3-239ENST00000628023 DSTNP60981 165 aa16.49■□□□□ 0.23
CLN3-239ENST00000628023 HSF1Q00613 529 aa16.49■□□□□ 0.23
CLN3-239ENST00000628023 FNDC7Q5VTL7 733 aa16.49■□□□□ 0.23
CLN3-239ENST00000628023 HEPHL1Q6MZM0 1159 aa16.49■□□□□ 0.23
CLN3-239ENST00000628023 FJX1Q86VR8 437 aa16.49■□□□□ 0.23
CLN3-239ENST00000628023 PLCZ1Q86YW0 608 aa16.49■□□□□ 0.23
CLN3-239ENST00000628023 DPP10Q8N608 796 aa16.49■□□□□ 0.23
CLN3-239ENST00000628023 GATSQ8NAP1 163 aa16.49■□□□□ 0.23
CLN3-239ENST00000628023 ZNF350Q9GZX5 532 aa16.49■□□□□ 0.23
CLN3-239ENST00000628023 QPCTLQ9NXS2 382 aa16.49■□□□□ 0.23
CLN3-239ENST00000628023 VAPAQ9P0L0 249 aa16.49■□□□□ 0.23
CLN3-239ENST00000628023 DKKL1Q9UK85 242 aa16.49■□□□□ 0.23
CLN3-239ENST00000628023 CORO2BQ9UQ03 480 aa16.49■□□□□ 0.23
CLN3-239ENST00000628023 LIPT1Q9Y234 373 aa16.49■□□□□ 0.23
CLN3-239ENST00000628023 WDR45Q9Y484 360 aa16.49■□□□□ 0.23
CLN3-239ENST00000628023 LOC100653049A0A140TA62 436 aa16.48■□□□□ 0.23
CLN3-239ENST00000628023 H3BNH8 94 aa16.48■□□□□ 0.23
CLN3-239ENST00000628023 ZG16O60844 167 aa16.48■□□□□ 0.23
CLN3-239ENST00000628023 KRT34O76011 436 aa16.48■□□□□ 0.23
CLN3-239ENST00000628023 CELA3AP09093 270 aa16.48■□□□□ 0.23
CLN3-239ENST00000628023 ABOP16442 354 aa16.48■□□□□ 0.23
CLN3-239ENST00000628023 HOXB9P17482 250 aaPredicted RBP16.48■□□□□ 0.23
CLN3-239ENST00000628023 GAS1P54826 345 aa16.48■□□□□ 0.23
CLN3-239ENST00000628023 C17orf67Q0P5P2 114 aa16.48■□□□□ 0.23
CLN3-239ENST00000628023 FADDQ13158 208 aa16.48■□□□□ 0.23
CLN3-239ENST00000628023 CYLC2Q14093 348 aaPredicted RBP16.48■□□□□ 0.23
CLN3-239ENST00000628023 RGNQ15493 299 aa16.48■□□□□ 0.23
CLN3-239ENST00000628023 REP15Q6BDI9 236 aa16.48■□□□□ 0.23
CLN3-239ENST00000628023 OLIG3Q7RTU3 272 aa16.48■□□□□ 0.23
CLN3-239ENST00000628023 RETREG3Q86VR2 466 aa16.48■□□□□ 0.23
CLN3-239ENST00000628023 MISPQ8IVT2 679 aa16.48■□□□□ 0.23
CLN3-239ENST00000628023 WDSUB1Q8N9V3 476 aa16.48■□□□□ 0.23
CLN3-239ENST00000628023 HHATLQ9HCP6 504 aa16.48■□□□□ 0.23
CLN3-239ENST00000628023 POLE3Q9NRF9 147 aa16.48■□□□□ 0.23
CLN3-239ENST00000628023 THUMPD1Q9NXG2 353 aaKnown RBP16.48■□□□□ 0.23
CLN3-239ENST00000628023 SUCOQ9UBS9 1254 aaKnown RBP16.48■□□□□ 0.23
CLN3-239ENST00000628023 MKLN1Q9UL63 735 aa16.48■□□□□ 0.23
CLN3-239ENST00000628023 ARL2BPQ9Y2Y0 163 aa16.48■□□□□ 0.23
CLN3-239ENST00000628023 LIPGQ9Y5X9 500 aa16.48■□□□□ 0.23
CLN3-239ENST00000628023 TRGV5A0A0B4J1U4 118 aa16.47■□□□□ 0.23
CLN3-239ENST00000628023 MRASO14807 208 aa16.47■□□□□ 0.23
CLN3-239ENST00000628023 GMFGO60234 142 aa16.47■□□□□ 0.23
CLN3-239ENST00000628023 CBR3O75828 277 aa16.47■□□□□ 0.23
CLN3-239ENST00000628023 WISP2O76076 250 aa16.47■□□□□ 0.23
CLN3-239ENST00000628023 H6PDO95479 791 aa16.47■□□□□ 0.23
CLN3-239ENST00000628023 RNF144AP50876 292 aaPredicted RBP16.47■□□□□ 0.23
CLN3-239ENST00000628023 MVDP53602 400 aa16.47■□□□□ 0.23
CLN3-239ENST00000628023 ATP12AP54707 1039 aa16.47■□□□□ 0.23
CLN3-239ENST00000628023 FUT5Q11128 374 aa16.47■□□□□ 0.23
CLN3-239ENST00000628023 GNA13Q14344 377 aa16.47■□□□□ 0.23
CLN3-239ENST00000628023 SYPL1Q16563 259 aa16.47■□□□□ 0.23
CLN3-239ENST00000628023 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.47■□□□□ 0.23
CLN3-239ENST00000628023 TRMT5Q32P41 509 aaKnown RBP16.47■□□□□ 0.23
CLN3-239ENST00000628023 ARHGAP11AQ6P4F7 1023 aa16.47■□□□□ 0.23
CLN3-239ENST00000628023 APOOLQ6UXV4 268 aa16.47■□□□□ 0.23
CLN3-239ENST00000628023 DLEU7Q6UYE1 221 aa16.47■□□□□ 0.23
CLN3-239ENST00000628023 MSRB3Q8IXL7 192 aa16.47■□□□□ 0.23
CLN3-239ENST00000628023 ZNF619Q8N2I2 560 aa16.47■□□□□ 0.23
CLN3-239ENST00000628023 ANKFN1Q8N957 763 aa16.47■□□□□ 0.23
CLN3-239ENST00000628023 PCYOX1LQ8NBM8 494 aa16.47■□□□□ 0.23
CLN3-239ENST00000628023 DUSP19Q8WTR2 217 aa16.47■□□□□ 0.23
CLN3-239ENST00000628023 RELTQ969Z4 430 aa16.47■□□□□ 0.23
CLN3-239ENST00000628023 NTNG2Q96CW9 530 aa16.47■□□□□ 0.23
CLN3-239ENST00000628023 TRNT1Q96Q11 434 aaKnown RBP16.47■□□□□ 0.23
CLN3-239ENST00000628023 CGREF1Q99674 301 aa16.47■□□□□ 0.23
CLN3-239ENST00000628023 SLC6A15Q9H2J7 730 aa16.47■□□□□ 0.23
CLN3-239ENST00000628023 DSN1Q9H410 356 aa16.47■□□□□ 0.23
CLN3-239ENST00000628023 RUBCNLQ9H714 662 aa16.47■□□□□ 0.23
CLN3-239ENST00000628023 FBXL2Q9UKC9 423 aa16.47■□□□□ 0.23
CLN3-239ENST00000628023 ADAM21Q9UKJ8 722 aa16.47■□□□□ 0.23
CLN3-239ENST00000628023 TRBV5-3A0A0A0MS03 114 aa16.46■□□□□ 0.23
CLN3-239ENST00000628023 A0A1B0GTH9 108 aa16.46■□□□□ 0.23
CLN3-239ENST00000628023 A0A1W2PQD3 144 aa16.46■□□□□ 0.23
CLN3-239ENST00000628023 C17orf51A8MQB3 221 aa16.46■□□□□ 0.23
CLN3-239ENST00000628023 FBP2O00757 339 aa16.46■□□□□ 0.23
CLN3-239ENST00000628023 HNRNPRO43390 633 aaKnown RBP16.46■□□□□ 0.23
CLN3-239ENST00000628023 KIAA0513O60268 411 aa16.46■□□□□ 0.23
CLN3-239ENST00000628023 FCMRO60667 390 aa16.46■□□□□ 0.23
CLN3-239ENST00000628023 BCHEP06276 602 aa16.46■□□□□ 0.23
CLN3-239ENST00000628023 TCEA1P23193 301 aaKnown RBP16.46■□□□□ 0.23
CLN3-239ENST00000628023 GCKP35557 465 aa16.46■□□□□ 0.23
CLN3-239ENST00000628023 CASP6P55212 293 aa16.46■□□□□ 0.23
CLN3-239ENST00000628023 CAPRIN1Q14444 709 aaKnown RBP16.46■□□□□ 0.23
CLN3-239ENST00000628023 COQ5Q5HYK3 327 aa16.46■□□□□ 0.23
CLN3-239ENST00000628023 PDZK1Q5T2W1 519 aa16.46■□□□□ 0.23
CLN3-239ENST00000628023 GCNT6Q5T4J0 391 aa16.46■□□□□ 0.23
CLN3-239ENST00000628023 C1QL3Q5VWW1 255 aa16.46■□□□□ 0.23
CLN3-239ENST00000628023 TYW3Q6IPR3 259 aaKnown RBP16.46■□□□□ 0.23
CLN3-239ENST00000628023 MTFR2Q6P444 385 aa16.46■□□□□ 0.23
CLN3-239ENST00000628023 TRILQ7L0X0 811 aa16.46■□□□□ 0.23
CLN3-239ENST00000628023 PIGWQ7Z7B1 504 aa16.46■□□□□ 0.23
CLN3-239ENST00000628023 SPPL2CQ8IUH8 684 aa16.46■□□□□ 0.23
CLN3-239ENST00000628023 POU5F2Q8N7G0 328 aa16.46■□□□□ 0.23
CLN3-239ENST00000628023 OR14L1PQ8NHC6 308 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms