RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 ATOH8Q96SQ7 321 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 SDHAF3Q9NRP4 125 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 WASF3Q9UPY6 502 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 CSO75390 466 aaKnown RBP8.42□□□□□ -1.06
VCL-206ENST00000623461 BPNT1O95861 308 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 AANATQ16613 207 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 SLC18B1Q6NT16 456 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 SGPP2Q8IWX5 399 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 TRAM1L1Q8N609 369 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 SMARCD2Q92925 531 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 PNPLA2Q96AD5 504 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 SLC2A11Q9BYW1 496 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 SPNS1Q9H2V7 528 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 SEMA4GQ9NTN9 838 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 PLCXD1Q9NUJ7 323 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 ZNF701Q9NV72 531 aaPredicted RBP8.42□□□□□ -1.06
VCL-206ENST00000623461 AGAP14A8MT82 685 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 SMLR1H3BR10 107 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 H3BSH0 61 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 ZBTB48P10074 688 aaPredicted RBP8.42□□□□□ -1.06
VCL-206ENST00000623461 NKX3-2P78367 333 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 HSD11B2P80365 405 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 GPR26Q8NDV2 337 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 BTF3L4Q96K17 158 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 GABARAPL1Q9H0R8 117 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 LAMB2P55268 1798 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 AGPAT2O15120 278 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 GPR39O43194 453 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 GDNFP39905 211 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 OR10K2Q6IF99 312 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 CRB3Q9BUF7 120 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 ZNF225Q9UK10 706 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 FBXL4Q9UKA2 621 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 HCRTO43612 131 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 APODP05090 189 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 GAAP10253 952 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 LAG3P18627 525 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 SLC14A2Q15849 920 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 TOR2AQ5JU69 321 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 SHDQ96IW2 340 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 C1QTNF2Q9BXJ5 285 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 C20orf85Q9H1P6 137 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 DDX31Q9H8H2 851 aaKnown RBP8.42□□□□□ -1.06
VCL-206ENST00000623461 ASB6Q9NWX5 421 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 A0A0A6YYH2 397 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 A6NJ64 397 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 CCDC85CA6NKD9 419 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 DIRAS3O95661 229 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 IL1RNP18510 177 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 HOXD11P31277 338 aaPredicted RBP8.42□□□□□ -1.06
VCL-206ENST00000623461 VEGFCP49767 419 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 BAMBIQ13145 260 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 AVL9Q8NBF6 648 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 ZBTB44Q8NCP5 570 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 DZANK1Q9NVP4 752 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 PRELID3BQ9Y3B1 194 aa8.42□□□□□ -1.06
VCL-206ENST00000623461 GPRIN2O60269 458 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 SBK2P0C263 348 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 NOVP48745 357 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 RPS25P62851 125 aaKnown RBP8.41□□□□□ -1.06
VCL-206ENST00000623461 FAM189BP81408 668 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 SEMG2Q02383 582 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 TMEM115Q12893 351 aaPredicted RBP8.41□□□□□ -1.06
VCL-206ENST00000623461 ILKQ13418 452 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 ALG10BQ5I7T1 473 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 ZNF679Q8IYX0 411 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 OR1M1Q8NGA1 313 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 TSPAN10Q9H1Z9 355 aaPredicted RBP8.41□□□□□ -1.06
VCL-206ENST00000623461 SEC61A2Q9H9S3 476 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 FAM212BQ9NTI7 297 aaPredicted RBP8.41□□□□□ -1.06
VCL-206ENST00000623461 ZNF226Q9NYT6 803 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 COL1A1P02452 1464 aaPredicted RBP8.41□□□□□ -1.06
VCL-206ENST00000623461 SEC14L5O43304 696 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 TGM1P22735 817 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 HNF1BP35680 557 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 C18orf21Q32NC0 220 aaPredicted RBP8.41□□□□□ -1.06
VCL-206ENST00000623461 ZNF789Q5FWF6 425 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 PHOSPHO1Q8TCT1 267 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 CRYGNQ8WXF5 182 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 MBOAT4Q96T53 435 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 ARNT2Q9HBZ2 717 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 KLHL42Q9P2K6 505 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 FZD1Q9UP38 647 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 PCDHGA6Q9Y5G7 932 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 KCPQ6ZWJ8 1503 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 TTLL8A6PVC2 850 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 HSBP1L1C9JCN9 74 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 HMGCLP35914 325 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 PIGAP37287 484 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 CLDN20P56880 219 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 PITX1P78337 314 aaPredicted RBP8.41□□□□□ -1.06
VCL-206ENST00000623461 SLC29A4Q7RTT9 530 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 PDLIM5Q96HC4 596 aaKnown RBP8.41□□□□□ -1.06
VCL-206ENST00000623461 TUBG2Q9NRH3 451 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 SMPD1P17405 629 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 MAGEB1P43366 347 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 HCCSP53701 268 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 BCL2A1Q16548 175 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 RAB6CQ53S08 254 aa8.41□□□□□ -1.06
VCL-206ENST00000623461 GPR157Q5UAW9 335 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms