RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 IKBIPQ70UQ0 350 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 THAP5Q7Z6K1 395 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 SPPL2CQ8IUH8 684 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 GALNT12Q8IXK2 581 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 ADGRG5Q8IZF4 528 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 LRRC25Q8N386 305 aaPredicted RBP4.84□□□□□ -1.63
SHMT1-211ENST00000618902 CBR4Q8N4T8 237 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 NATD1Q8N6N6 113 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 ZNF441Q8N8Z8 693 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 SETD9Q8NE22 299 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 OR7G1Q8NGA0 311 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 OR9I1Q8NGQ6 314 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 B4GALNT2Q8NHY0 566 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 TRUB1Q8WWH5 349 aaKnown RBP4.84□□□□□ -1.63
SHMT1-211ENST00000618902 S100ZQ8WXG8 99 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 NR4A3Q92570 626 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 RIT1Q92963 219 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 TP53INP1Q96A56 240 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 COQ8BQ96D53 544 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 SNRNP40Q96DI7 357 aaKnown RBP4.84□□□□□ -1.63
SHMT1-211ENST00000618902 ITPKCQ96DU7 683 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 SCMH1Q96GD3 660 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 ZNF764Q96H86 408 aaPredicted RBP4.84□□□□□ -1.63
SHMT1-211ENST00000618902 C5orf34Q96MH7 638 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 DGAT2Q96PD7 388 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 SLC29A1Q99808 456 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 CIB1Q99828 191 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 SLX1AQ9BQ83 275 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 CNPPD1Q9BV87 410 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 FAIM2Q9BWQ8 316 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 CHID1Q9BWS9 393 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 HES7Q9BYE0 225 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 GRIP2Q9C0E4 1043 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP4.84□□□□□ -1.63
SHMT1-211ENST00000618902 PCDHAC1Q9H158 963 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 CDCP1Q9H5V8 836 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 RUBCNLQ9H714 662 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 CCNB1IP1Q9NPC3 277 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 PLSCR2Q9NRY7 297 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 SIRT3Q9NTG7 399 aaPredicted RBP4.84□□□□□ -1.63
SHMT1-211ENST00000618902 CMTM6Q9NX76 183 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 EHD3Q9NZN3 535 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 PTGFRNQ9P2B2 879 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 CORO2BQ9UQ03 480 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 AURKCQ9UQB9 309 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 SLC5A6Q9Y289 635 aa4.84□□□□□ -1.63
SHMT1-211ENST00000618902 KLF13Q9Y2Y9 288 aaPredicted RBP4.84□□□□□ -1.63
SHMT1-211ENST00000618902 CSMD1Q96PZ7 3565 aa4.84□□□□□ -1.64
SHMT1-211ENST00000618902 GIMAP1-GIMAP5A0A087WTJ2 511 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 A0A0G2JMM0 328 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 A0A1W2PPB8 328 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 A0A1W2PRS3 328 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 TCRBV5S2A0A599 114 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 ANKUB1A6NFN9 424 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 KIR3DP1A8MWS1 328 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 G3V2T6 193 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 FXYD1O00168 92 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 WWP2O00308 870 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 NR5A2O00482 541 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 GSTA4O15217 222 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 SLC16A6O15403 523 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 PLOD3O60568 738 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 TIPRLO75663 272 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 C6orf47O95873 294 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 ATP1B1P05026 303 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 SP1P08047 785 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 STSP08842 583 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 TNNI3P19429 210 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 GGT1P19440 569 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 PPIBP23284 216 aaKnown RBP4.83□□□□□ -1.64
SHMT1-211ENST00000618902 PTPN6P29350 595 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 CD96P40200 585 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 MC3RP41968 323 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 ASMTP46597 345 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 TRPC1P48995 793 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 GSK3BP49841 420 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 EMDP50402 254 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 NCBP2P52298 156 aaKnown RBP eCLIP4.83□□□□□ -1.64
SHMT1-211ENST00000618902 NRG3P56975 720 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 RNF4P78317 190 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 MVKQ03426 396 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 GTF3C1Q12789 2109 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 KRR1Q13601 381 aaKnown RBP4.83□□□□□ -1.64
SHMT1-211ENST00000618902 EBPQ15125 230 aaKnown RBP4.83□□□□□ -1.64
SHMT1-211ENST00000618902 SF3B4Q15427 424 aaKnown RBP eCLIP4.83□□□□□ -1.64
SHMT1-211ENST00000618902 MAPKAPK3Q16644 382 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 HYAL4Q2M3T9 481 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 CYBRD1Q53TN4 286 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 ZNF766Q5HY98 468 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 SPANXN4Q5MJ08 99 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 EXOSC6Q5RKV6 272 aaKnown RBP4.83□□□□□ -1.64
SHMT1-211ENST00000618902 ZNF324BQ6AW86 544 aaPredicted RBP4.83□□□□□ -1.64
SHMT1-211ENST00000618902 HMBOX1Q6NT76 420 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 TMEM81Q6P7N7 255 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 TUBA3EQ6PEY2 450 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 ZNF773Q6PK81 442 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 TMEM107Q6UX40 140 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 WDR53Q7Z5U6 358 aaPredicted RBP4.83□□□□□ -1.64
SHMT1-211ENST00000618902 CAMKMTQ7Z624 323 aa4.83□□□□□ -1.64
SHMT1-211ENST00000618902 AMIGO2Q86SJ2 522 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms