RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 LMF2Q9BU23 707 aaKnown RBP17.13■□□□□ 0.33
CDX1-202ENST00000616154 NEUROD4Q9HD90 331 aa17.13■□□□□ 0.33
CDX1-202ENST00000616154 DDX18Q9NVP1 670 aaKnown RBP17.13■□□□□ 0.33
CDX1-202ENST00000616154 BEX4Q9NWD9 120 aaPredicted RBP17.13■□□□□ 0.33
CDX1-202ENST00000616154 PCNX3Q9H6A9 2034 aa17.12■□□□□ 0.33
CDX1-202ENST00000616154 MSTNO14793 375 aa17.12■□□□□ 0.33
CDX1-202ENST00000616154 CRHP06850 196 aa17.12■□□□□ 0.33
CDX1-202ENST00000616154 CD53P19397 219 aa17.12■□□□□ 0.33
CDX1-202ENST00000616154 HOXC12P31275 282 aa17.12■□□□□ 0.33
CDX1-202ENST00000616154 PCYT1AP49585 367 aa17.12■□□□□ 0.33
CDX1-202ENST00000616154 RPL14P50914 215 aaKnown RBP17.12■□□□□ 0.33
CDX1-202ENST00000616154 B3GALT5-AS1P59052 145 aa17.12■□□□□ 0.33
CDX1-202ENST00000616154 MLC1Q15049 377 aa17.12■□□□□ 0.33
CDX1-202ENST00000616154 SLC44A2Q8IWA5 706 aaPredicted RBP17.12■□□□□ 0.33
CDX1-202ENST00000616154 OR4K17Q8NGC6 315 aa17.12■□□□□ 0.33
CDX1-202ENST00000616154 OR4N2Q8NGD1 307 aa17.12■□□□□ 0.33
CDX1-202ENST00000616154 EFHD2Q96C19 240 aaPredicted RBP17.12■□□□□ 0.33
CDX1-202ENST00000616154 PPCDCQ96CD2 204 aa17.12■□□□□ 0.33
CDX1-202ENST00000616154 ZBED6CLQ96FA7 236 aaPredicted RBP17.12■□□□□ 0.33
CDX1-202ENST00000616154 C3orf30Q96M34 536 aa17.12■□□□□ 0.33
CDX1-202ENST00000616154 ATP6V1HQ9UI12 483 aa17.12■□□□□ 0.33
CDX1-202ENST00000616154 TESMINQ9Y4I5 508 aa17.12■□□□□ 0.33
CDX1-202ENST00000616154 TGDSO95455 350 aa17.11■□□□□ 0.33
CDX1-202ENST00000616154 MAPK1P28482 360 aa17.11■□□□□ 0.33
CDX1-202ENST00000616154 EVI2BP34910 448 aa17.11■□□□□ 0.33
CDX1-202ENST00000616154 CPOXP36551 454 aa17.11■□□□□ 0.33
CDX1-202ENST00000616154 DSCR4P56555 118 aaPredicted RBP17.11■□□□□ 0.33
CDX1-202ENST00000616154 GNGT1P63211 74 aa17.11■□□□□ 0.33
CDX1-202ENST00000616154 ZNF155Q12901 538 aaPredicted RBP17.11■□□□□ 0.33
CDX1-202ENST00000616154 C6orf136Q5SQH8 315 aa17.11■□□□□ 0.33
CDX1-202ENST00000616154 OR2A2Q6IF42 318 aa17.11■□□□□ 0.33
CDX1-202ENST00000616154 ZNF551Q7Z340 670 aaPredicted RBP17.11■□□□□ 0.33
CDX1-202ENST00000616154 R3HCC1LQ7Z5L2 792 aaKnown RBP17.11■□□□□ 0.33
CDX1-202ENST00000616154 BIVMQ86UB2 503 aa17.11■□□□□ 0.33
CDX1-202ENST00000616154 KRTAP1-3Q8IUG1 177 aa17.11■□□□□ 0.33
CDX1-202ENST00000616154 FADS6Q8N9I5 356 aa17.11■□□□□ 0.33
CDX1-202ENST00000616154 PIWIL2Q8TC59 973 aaKnown RBP17.11■□□□□ 0.33
CDX1-202ENST00000616154 CHMP6Q96FZ7 201 aa17.11■□□□□ 0.33
CDX1-202ENST00000616154 PNPOQ9NVS9 261 aa17.11■□□□□ 0.33
CDX1-202ENST00000616154 PPP4R1LQ9P1A2 415 aa17.11■□□□□ 0.33
CDX1-202ENST00000616154 NDRG3Q9UGV2 375 aa17.11■□□□□ 0.33
CDX1-202ENST00000616154 BAIAP2L1Q9UHR4 511 aa17.11■□□□□ 0.33
CDX1-202ENST00000616154 OR10H1Q9Y4A9 318 aa17.11■□□□□ 0.33
CDX1-202ENST00000616154 ARID1AO14497 2285 aa17.11■□□□□ 0.33
CDX1-202ENST00000616154 C17orf51A8MQB3 221 aa17.1■□□□□ 0.33
CDX1-202ENST00000616154 ZNF195O14628 629 aa17.1■□□□□ 0.33
CDX1-202ENST00000616154 CASKO14936 926 aa17.1■□□□□ 0.33
CDX1-202ENST00000616154 PEPDP12955 493 aa17.1■□□□□ 0.33
CDX1-202ENST00000616154 DDX5P17844 614 aaKnown RBP17.1■□□□□ 0.33
CDX1-202ENST00000616154 TCEA1P23193 301 aaKnown RBP17.1■□□□□ 0.33
CDX1-202ENST00000616154 RPL3P39023 403 aaKnown RBP17.1■□□□□ 0.33
CDX1-202ENST00000616154 C21orf58P58505 322 aa17.1■□□□□ 0.33
CDX1-202ENST00000616154 SMU1Q2TAY7 513 aa17.1■□□□□ 0.33
CDX1-202ENST00000616154 GALNTL6Q49A17 601 aa17.1■□□□□ 0.33
CDX1-202ENST00000616154 ATP6AP1LQ52LC2 224 aa17.1■□□□□ 0.33
CDX1-202ENST00000616154 EXOSC6Q5RKV6 272 aaKnown RBP17.1■□□□□ 0.33
CDX1-202ENST00000616154 ANKRD26P1Q6NSI1 321 aa17.1■□□□□ 0.33
CDX1-202ENST00000616154 P4HA3Q7Z4N8 544 aa17.1■□□□□ 0.33
CDX1-202ENST00000616154 LRRC34Q8IZ02 419 aa17.1■□□□□ 0.33
CDX1-202ENST00000616154 ZFP28Q8NHY6 868 aa17.1■□□□□ 0.33
CDX1-202ENST00000616154 GFM2Q969S9 779 aaKnown RBP17.1■□□□□ 0.33
CDX1-202ENST00000616154 CIDECQ96AQ7 238 aaPredicted RBP17.1■□□□□ 0.33
CDX1-202ENST00000616154 STARD4Q96DR4 205 aa17.1■□□□□ 0.33
CDX1-202ENST00000616154 ASIC5Q9NY37 505 aa17.1■□□□□ 0.33
CDX1-202ENST00000616154 ABCG2Q9UNQ0 655 aa17.1■□□□□ 0.33
CDX1-202ENST00000616154 EIF3LQ9Y262 564 aaKnown RBP17.1■□□□□ 0.33
CDX1-202ENST00000616154 GIMAP1-GIMAP5A0A087WTJ2 511 aa17.09■□□□□ 0.33
CDX1-202ENST00000616154 SLC22A20A6NK97 555 aa17.09■□□□□ 0.33
CDX1-202ENST00000616154 SLCO1B7G3V0H7 640 aa17.09■□□□□ 0.33
CDX1-202ENST00000616154 SCAMP2O15127 329 aaKnown RBP17.09■□□□□ 0.33
CDX1-202ENST00000616154 AKAP10O43572 662 aa17.09■□□□□ 0.33
CDX1-202ENST00000616154 SCO2O43819 266 aa17.09■□□□□ 0.33
CDX1-202ENST00000616154 PEX11AO75192 247 aa17.09■□□□□ 0.33
CDX1-202ENST00000616154 PRPS2P11908 318 aa17.09■□□□□ 0.33
CDX1-202ENST00000616154 CGB2Q6NT52 195 aa17.09■□□□□ 0.33
CDX1-202ENST00000616154 CHMP1BQ7LBR1 199 aa17.09■□□□□ 0.33
CDX1-202ENST00000616154 CXorf67Q86X51 503 aaPredicted RBP17.09■□□□□ 0.33
CDX1-202ENST00000616154 MEIOBQ8N635 442 aa17.09■□□□□ 0.33
CDX1-202ENST00000616154 OR2M3Q8NG83 312 aa17.09■□□□□ 0.33
CDX1-202ENST00000616154 CLHC1Q8NHS4 586 aa17.09■□□□□ 0.33
CDX1-202ENST00000616154 PSMA8Q8TAA3 256 aa17.09■□□□□ 0.33
CDX1-202ENST00000616154 AGR3Q8TD06 166 aa17.09■□□□□ 0.33
CDX1-202ENST00000616154 STON2Q8WXE9 905 aa17.09■□□□□ 0.33
CDX1-202ENST00000616154 GIMAP5Q96F15 307 aa17.09■□□□□ 0.33
CDX1-202ENST00000616154 C18orf12Q96KH6 178 aa17.09■□□□□ 0.33
CDX1-202ENST00000616154 DSN1Q9H410 356 aa17.09■□□□□ 0.33
CDX1-202ENST00000616154 Q9N2J8 555 aa17.09■□□□□ 0.33
CDX1-202ENST00000616154 FGFR1OP2Q9NVK5 253 aa17.09■□□□□ 0.33
CDX1-202ENST00000616154 GIMAP2Q9UG22 337 aa17.09■□□□□ 0.33
CDX1-202ENST00000616154 GMNCA6NCL1 334 aa17.08■□□□□ 0.32
CDX1-202ENST00000616154 HDAC3O15379 428 aa17.08■□□□□ 0.32
CDX1-202ENST00000616154 FADS1O60427 444 aa17.08■□□□□ 0.32
CDX1-202ENST00000616154 NKX2-2O95096 273 aa17.08■□□□□ 0.32
CDX1-202ENST00000616154 IL33O95760 270 aa17.08■□□□□ 0.32
CDX1-202ENST00000616154 VIMP08670 466 aaKnown RBP17.08■□□□□ 0.32
CDX1-202ENST00000616154 SEC24CP53992 1094 aa17.08■□□□□ 0.32
CDX1-202ENST00000616154 EEFSECP57772 596 aaKnown RBP17.08■□□□□ 0.32
CDX1-202ENST00000616154 FAM27E3Q08E93 113 aa17.08■□□□□ 0.32
CDX1-202ENST00000616154 HSPB3Q12988 150 aa17.08■□□□□ 0.32
CDX1-202ENST00000616154 GANABQ14697 944 aaKnown RBP17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms