RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 BCL7AQ4VC05 210 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 SLC18B1Q6NT16 456 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 CYP4V2Q6ZWL3 525 aaPredicted RBP13.18□□□□□ -0.3
CPSF1-212ENST00000616140 LPAR4Q99677 370 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 SLC5A7Q9GZV3 580 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 CWH43Q9H720 699 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 ACTR10Q9NZ32 417 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 OR6C2Q9NZP2 312 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 KCNN3Q9UGI6 736 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 HS3ST2Q9Y278 367 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 DCDC2BA2VCK2 349 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 CLDN24A6NM45 220 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 PROS1P07225 676 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 AMY2BP19961 511 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 CTBP2P56545 445 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 HSD11B2P80365 405 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 AGAP6Q5VW22 663 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 TRIM46Q7Z4K8 759 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 VRK2Q86Y07 508 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 MUL1Q969V5 352 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 AGAP4Q96P64 663 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 IL37Q9NZH6 218 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 KLHL21Q9UJP4 597 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 CROCCQ5TZA2 2017 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 CD3GP09693 182 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 PET100P0DJ07 73 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 P2RY2P41231 377 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 POU3F4P49335 361 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 PTRH1Q86Y79 214 aaKnown RBP13.18□□□□□ -0.3
CPSF1-212ENST00000616140 METTL4Q8N3J2 472 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 OR13C3Q8NGS6 347 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 FGF13Q92913 245 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 RASD1Q9Y272 281 aa13.18□□□□□ -0.3
CPSF1-212ENST00000616140 HMX3A6NHT5 357 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 KCNK5O95279 499 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 PVRP15151 417 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 PSMB10P40306 273 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 NR0B1P51843 470 aaKnown RBP13.17□□□□□ -0.3
CPSF1-212ENST00000616140 NKX3-2P78367 333 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 GGTA1PQ4G0N0 100 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 LRIF1Q5T3J3 769 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 HAGHLQ6PII5 290 aaPredicted RBP13.17□□□□□ -0.3
CPSF1-212ENST00000616140 LRRC69Q6ZNQ3 347 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 TMEM151BQ8IW70 566 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 ZNF619Q8N2I2 560 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 MRPL43Q8N983 215 aaKnown RBP13.17□□□□□ -0.3
CPSF1-212ENST00000616140 TBC1D15Q8TC07 691 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 CD300LFQ8TDQ1 290 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 SLC38A5Q8WUX1 472 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 NEDD4LQ96PU5 975 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 RABL2AQ9UBK7 228 aaPredicted RBP13.17□□□□□ -0.3
CPSF1-212ENST00000616140 KLF15Q9UIH9 416 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 RABL2BQ9UNT1 228 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 ENTPD2Q9Y5L3 495 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 TRBV4-1A0A0J9YWV2 114 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 RAD51DO75771 328 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 IL33O95760 270 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 S100A2P29034 98 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 HNRNPKP61978 463 aaKnown RBP eCLIP13.17□□□□□ -0.37e-7■■■■□ 25.3
CPSF1-212ENST00000616140 CHRNEQ04844 493 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 PLP2Q04941 152 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 TUBB3Q13509 450 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 TCTE1Q5JU00 501 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 SPNS2Q8IVW8 549 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 ALDH16A1Q8IZ83 802 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 L3MBTL4Q8NA19 623 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 NUDT8Q8WV74 236 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 ELMOD3Q96FG2 381 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 SLC25A18Q9H1K4 315 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 TEX10Q9NXF1 929 aaPredicted RBP13.17□□□□□ -0.3
CPSF1-212ENST00000616140 MYEF2Q9P2K5 600 aaKnown RBP13.17□□□□□ -0.3
CPSF1-212ENST00000616140 IGLV3-10A0A075B6K4 115 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 SGK494L7N484 410 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 NPC1O15118 1278 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 CYP17A1P05093 508 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 AKR1C4P17516 323 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 KCNJ5P48544 419 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 ZNF84P51523 738 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 PRPS1P60891 318 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 MGAT3Q09327 533 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 KIR2DS3Q14952 304 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 EXOSC7Q15024 291 aaKnown RBP13.17□□□□□ -0.3
CPSF1-212ENST00000616140 RAET1LQ5VY80 246 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 NOXA1Q86UR1 476 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 SLC7A5P1Q8MH63 180 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 DIO2Q92813 273 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 THAP7Q9BT49 309 aaPredicted RBP13.17□□□□□ -0.3
CPSF1-212ENST00000616140 STARD5Q9NSY2 213 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 ACSS1Q9NUB1 689 aaPredicted RBP13.17□□□□□ -0.3
CPSF1-212ENST00000616140 B3GNT3Q9Y2A9 372 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 TAF1P21675 1872 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 NUP214P35658 2090 aaPredicted RBP13.17□□□□□ -0.3
CPSF1-212ENST00000616140 ARPC5O15511 151 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 HPGDSO60760 199 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 TIMP1P01033 207 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 GASTP01350 101 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 MLLT11Q13015 90 aaPredicted RBP13.17□□□□□ -0.3
CPSF1-212ENST00000616140 PCGF3Q3KNV8 242 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 PLEKHN1Q494U1 663 aaPredicted RBP13.17□□□□□ -0.3
CPSF1-212ENST00000616140 SLCO4C1Q6ZQN7 724 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms