RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 CHRM4P08173 479 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 MATN1P21941 496 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 ACVR2AP27037 513 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 DPP4P27487 766 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 LHX2P50458 406 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 DLX5P56178 289 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 CHRNEQ04844 493 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 DCST2Q5T1A1 773 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 ZNF621Q6ZSS3 439 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 NUP54Q7Z3B4 507 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 RETREG3Q86VR2 466 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 PLCZ1Q86YW0 608 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 ULK2Q8IYT8 1036 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 SLC15A4Q8N697 577 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 FAM110BQ8TC76 370 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 LRRC8CQ8TDW0 803 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 DYDC1Q8WWB3 177 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 SDF2Q99470 211 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 PIGQQ9BRB3 760 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 SLC35A5Q9BS91 424 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 PIF1Q9H611 641 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 Q9N2J8 555 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 ACSS1Q9NUB1 689 aaPredicted RBP5.15□□□□□ -1.58
CPNE3-208ENST00000614678 NTMQ9P121 344 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 CHST2Q9Y4C5 530 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 PRRC2AP48634 2157 aaKnown RBP5.15□□□□□ -1.58
CPNE3-208ENST00000614678 IGHV3-15A0A0B4J1V0 119 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 A0A0G2JND7 137 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 OR2M5A3KFT3 312 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 PRRG2O14669 202 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 TP53I11O14683 189 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 ACOX3O15254 700 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 AQP8O94778 261 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 TUBBP07437 444 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 FUT4P22083 530 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 RYKP34925 604 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 ASMTP46597 345 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 ZNF136P52737 540 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 PNLIPRP2P54317 469 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 CLDN18P56856 261 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 TFF3Q07654 80 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 OR5P2Q8WZ92 322 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 FIG4Q92562 907 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 PANX1Q96RD7 426 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 LIME1Q9H400 295 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 BOKQ9UMX3 212 aaPredicted RBP5.15□□□□□ -1.58
CPNE3-208ENST00000614678 PCDHB14Q9Y5E9 798 aa5.15□□□□□ -1.58
CPNE3-208ENST00000614678 A0A1B0GVC2 190 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 ANKRD33BA6NCL7 494 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 CCDC154A6NI56 674 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 ACOT7O00154 380 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 UBDO15205 165 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 TBX19O60806 448 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 UGT2B17O75795 530 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 HPNP05981 417 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 UBTFL6P0CB48 400 aaPredicted RBP5.15□□□□□ -1.59
CPNE3-208ENST00000614678 SEC24CP53992 1094 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 BIKQ13323 160 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 RAET1LQ5VY80 246 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 OGFOD2Q6N063 350 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 PPP4R4Q6NUP7 873 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 ZNF295-AS1Q8N0V1 137 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 OR8J2Q8NGG1 315 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 PSMA8Q8TAA3 256 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 INTS12Q96CB8 462 aaKnown RBP5.15□□□□□ -1.59
CPNE3-208ENST00000614678 TMEM41AQ96HV5 264 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 SDAD1Q9NVU7 687 aaKnown RBP eCLIP5.15□□□□□ -1.59
CPNE3-208ENST00000614678 VAPAQ9P0L0 249 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 PPP4R1LQ9P1A2 415 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 PRSS51A0A1B0GVH4 220 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 AP3D1O14617 1153 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 GP1BBP13224 206 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 CCNA2P20248 432 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 S100A3P33764 101 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 SFTPDP35247 375 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 SLC18A1P54219 525 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 DECR1Q16698 335 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 ACSF3Q4G176 576 aaPredicted RBP5.15□□□□□ -1.59
CPNE3-208ENST00000614678 TYW3Q6IPR3 259 aaKnown RBP5.15□□□□□ -1.59
CPNE3-208ENST00000614678 VWA1Q6PCB0 445 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 CAMKMTQ7Z624 323 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 LUZP2Q86TE4 346 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 ATG4DQ86TL0 474 aaPredicted RBP5.15□□□□□ -1.59
CPNE3-208ENST00000614678 FADS6Q8N9I5 356 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 CDRT4Q8N9R6 151 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 FNDC9Q8TBE3 224 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 PHOSPHO1Q8TCT1 267 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 ADAMTS15Q8TE58 950 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 ABTB1Q969K4 478 aaPredicted RBP5.15□□□□□ -1.59
CPNE3-208ENST00000614678 BHLHE41Q9C0J9 482 aaPredicted RBP5.15□□□□□ -1.59
CPNE3-208ENST00000614678 TCF7L2Q9NQB0 619 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 SDR39U1Q9NRG7 319 aaPredicted RBP5.15□□□□□ -1.59
CPNE3-208ENST00000614678 ARMCX1Q9P291 453 aa5.15□□□□□ -1.59
CPNE3-208ENST00000614678 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.15□□□□□ -1.59
CPNE3-208ENST00000614678 SETD2Q9BYW2 2564 aaPredicted RBP5.14□□□□□ -1.59
CPNE3-208ENST00000614678 NR5A2O00482 541 aa5.14□□□□□ -1.59
CPNE3-208ENST00000614678 RNASET2O00584 256 aaKnown RBP5.14□□□□□ -1.59
CPNE3-208ENST00000614678 AQP7O14520 342 aa5.14□□□□□ -1.59
CPNE3-208ENST00000614678 HCRTR2O43614 444 aa5.14□□□□□ -1.59
CPNE3-208ENST00000614678 COQ9O75208 318 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms