RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	RLIM	Q9NVW2	624 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	CLN6	Q9NWW5	311 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	SLC39A1	Q9NY26	324 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	PTGFRN	Q9P2B2	879 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	MKLN1	Q9UL63	735 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	TMCC3	Q9ULS5	477 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	PMF1-BGLAP	U3KQ54	211 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341		M0R082	166 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	ONECUT2	O95948	504 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	IFI6	P09912	130 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	ATXN8OS	P0DMR3	200 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	ADORA3	P0DMS8	318 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	OSM	P13725	252 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	CHM	P24386	653 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	PTGER1	P34995	402 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	LIPA	P38571	399 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	KCNJ5	P48544	419 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	IDH2	P48735	452 aa	Known RBP	10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	PRKAG1	P54619	331 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	NCS1	P62166	190 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	BTG2	P78543	158 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	ST3GAL4	Q11206	333 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	INA	Q16352	499 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	ZNF628	Q5EBL2	1059 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	SLC25A30	Q5SVS4	291 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	DHRS13	Q6UX07	377 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	QSOX2	Q6ZRP7	698 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	RAB11FIP2	Q7L804	512 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	KRT73	Q86Y46	540 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	AQP11	Q8NBQ7	271 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	GALNT6	Q8NCL4	622 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	DEFB124	Q8NES8	71 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	NUP43	Q8NFH3	380 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	PTCHD1	Q96NR3	888 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	DEPDC7	Q96QD5	511 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	PELO	Q9BRX2	385 aa	Known RBP	10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	RHNO1	Q9BSD3	238 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	TGIF2	Q9GZN2	237 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	DSN1	Q9H410	356 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	BCL2L10	Q9HD36	194 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	CHCHD3	Q9NX63	227 aa	Known RBP	10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	NTM	Q9P121	344 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	P2RX2	Q9UBL9	471 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	LOXL2	Q9Y4K0	774 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	PCDHGA3	Q9Y5H0	932 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341	ADAMTS20	P59510	1910 aa		10.87	□□□□□ -0.67
VRK3-223	ENST00000601341		A0A087WV62	115 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341		A0A1W2PRQ8	180 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	SYNDIG1L	A6NDD5	238 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	METTL15	A6NJ78	407 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	MEN1	O00255	615 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	PLOD3	O60568	738 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	CS	O75390	466 aa	Known RBP	10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	HMGN2	P05204	90 aa	Known RBP	10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	BMP4	P12644	408 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	MAOA	P21397	527 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	NR4A1	P22736	598 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	C21orf33	P30042	268 aa	Predicted RBP	10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	RORA	P35398	523 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	RGS6	P49758	472 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	CASP9	P55211	416 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	ZNF45	Q02386	682 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	EIF3I	Q13347	325 aa	Known RBP	10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	PUM1	Q14671	1186 aa	Known RBP eCLIP	10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	DUSP7	Q16829	419 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	PRICKLE4	Q2TBC4	344 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	MINDY4	Q4G0A6	757 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	VWA2	Q5GFL6	755 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	DCAF12	Q5T6F0	453 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	MFSD4B	Q5TF39	518 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	PLAG1	Q6DJT9	500 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	KLHL17	Q6TDP4	642 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	GDPGP1	Q6ZNW5	385 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	OR2L13	Q8N349	312 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	HORMAD2	Q8N7B1	307 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	OR7G2	Q8NG99	324 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	OR52J3	Q8NH60	311 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	MCFD2	Q8NI22	146 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	SLC35G5	Q96KT7	338 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	LRFN5	Q96NI6	719 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	DGAT2	Q96PD7	388 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	ZPBP	Q9BS86	351 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	NMNAT1	Q9HAN9	279 aa	Predicted RBP	10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	SLC22A11	Q9NSA0	550 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	C14orf105	Q9NVL8	296 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	AASS	Q9UDR5	926 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	CLDN16	Q9Y5I7	305 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	GPC6	Q9Y625	555 aa	Predicted RBP	10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	SEC16A	O15027	2179 aa		10.86	□□□□□ -0.67
VRK3-223	ENST00000601341	IGLV3-12	A0A075B6K2	115 aa		10.85	□□□□□ -0.67
VRK3-223	ENST00000601341	OR2W5	A6NFC9	320 aa		10.85	□□□□□ -0.67
VRK3-223	ENST00000601341	TGFBR3L	H3BV60	316 aa		10.85	□□□□□ -0.67
VRK3-223	ENST00000601341	HMGN4	O00479	90 aa		10.85	□□□□□ -0.67
VRK3-223	ENST00000601341	PCDH17	O14917	1159 aa		10.85	□□□□□ -0.67
VRK3-223	ENST00000601341	MAN1A2	O60476	641 aa		10.85	□□□□□ -0.67
VRK3-223	ENST00000601341	KLK3	P07288	261 aa	Predicted RBP	10.85	□□□□□ -0.67
VRK3-223	ENST00000601341	H1F0	P07305	194 aa	Known RBP	10.85	□□□□□ -0.67
VRK3-223	ENST00000601341	TNFRSF1B	P20333	461 aa		10.85	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms