RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	OR10A5	Q9H207	317 aa		11.65	□□□□□ -0.54
UPF1-208	ENST00000600012	FOLH1B	Q9HBA9	442 aa		11.65	□□□□□ -0.54
UPF1-208	ENST00000600012	LRFN1	Q9P244	771 aa		11.65	□□□□□ -0.54
UPF1-208	ENST00000600012	P2RX2	Q9UBL9	471 aa		11.65	□□□□□ -0.54
UPF1-208	ENST00000600012	DTX4	Q9Y2E6	619 aa		11.65	□□□□□ -0.54
UPF1-208	ENST00000600012	CLCA3P	Q9Y6N3	262 aa		11.65	□□□□□ -0.54
UPF1-208	ENST00000600012	TCRBV3S1	A0A5B6	114 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	C5orf58	C9J3I9	102 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	C19orf84	I3L1E1	186 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	DYRK3	O43781	588 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	SLC25A12	O75746	678 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	NEURL1	O76050	574 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	SERPINA1	P01009	418 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	OPN1SW	P03999	348 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	C8B	P07358	591 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	NR2F1	P10589	423 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	ZNF24	P17028	368 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	MAGEA8	P43361	318 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	EMD	P50402	254 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	VEZF1	Q14119	521 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	EXOSC6	Q5RKV6	272 aa	Known RBP	11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	SLC25A25	Q6KCM7	469 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	RPS19BP1	Q86WX3	136 aa	Known RBP	11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	ZNF615	Q8N8J6	731 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	CDRT4	Q8N9R6	151 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	OR14A16	Q8NHC5	309 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	C16orf52	Q8NHV5	167 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	FAM110B	Q8TC76	370 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	ELP5	Q8TE02	316 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	ZNF721	Q8TF20	911 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	SLC38A5	Q8WUX1	472 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	PIK3R3	Q92569	461 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	C14orf79	Q96F83	325 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	SLC35A4	Q96G79	324 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	SENP5	Q96HI0	755 aa	Predicted RBP	11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	FBXL20	Q96IG2	436 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	ITPA	Q9BY32	194 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	GORASP2	Q9H8Y8	452 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	ANGPT4	Q9Y264	503 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	CSMD2	Q7Z408	3487 aa		11.64	□□□□□ -0.55
UPF1-208	ENST00000600012	GXYLT2	A0PJZ3	443 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	SYNDIG1L	A6NDD5	238 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	TMEM247	A6NEH6	219 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	SAGE2P	A6NJ88	616 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	AQP12B	A6NM10	295 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012		E9PLN8	166 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	NME2P1	O60361	137 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	GCM2	O75603	506 aa	Predicted RBP	11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	ATP6V1G2	O95670	118 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	IGKV3-11	P04433	115 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	CHRM4	P08173	479 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	ALOX5	P09917	674 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	TFPT	P0C1Z6	253 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	NME2	P22392	152 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	KDELR2	P33947	212 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	ST13	P50502	369 aa	Known RBP	11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	SLC37A1	P57057	533 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	PCBP3	P57721	371 aa	Known RBP	11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	TXNL4A	P83876	142 aa	Known RBP	11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	RCN1	Q15293	331 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	CDSN	Q15517	529 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	NNAT	Q16517	81 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	GPAT3	Q53EU6	434 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	REEP3	Q6NUK4	255 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	ZCCHC12	Q6PEW1	402 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	ENPP6	Q6UWR7	440 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	NPSR1	Q6W5P4	371 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	RNF111	Q6ZNA4	994 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	C16orf62	Q7Z3J2	963 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	SLC30A8	Q8IWU4	369 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	AQP12A	Q8IXF9	295 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	ADGRG5	Q8IZF4	528 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	FAM86B1	Q8N7N1	296 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	COX18	Q8N8Q8	333 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	C7orf57	Q8NEG2	295 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	OR7G1	Q8NGA0	311 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	DAZL	Q92904	295 aa	Known RBP	11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	ART5	Q96L15	291 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	VSTM2L	Q96N03	204 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	SPOCK3	Q9BQ16	436 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	VKORC1	Q9BQB6	163 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	LMF2	Q9BU23	707 aa	Known RBP	11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	PIGU	Q9H490	435 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	CDCP1	Q9H5V8	836 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	S100A14	Q9HCY8	104 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	THUMPD1	Q9NXG2	353 aa	Known RBP	11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	ITGB1BP2	Q9UKP3	347 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	ADGRG4	Q8IZF6	3080 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	DCHS2	Q6V1P9	2916 aa		11.63	□□□□□ -0.55
UPF1-208	ENST00000600012	INTS1	Q8N201	2190 aa	Known RBP	11.62	□□□□□ -0.55
UPF1-208	ENST00000600012	DHRS12	A0PJE2	317 aa		11.62	□□□□□ -0.55
UPF1-208	ENST00000600012	DUXA	A6NLW8	204 aa		11.62	□□□□□ -0.55
UPF1-208	ENST00000600012		A8MVJ9	347 aa		11.62	□□□□□ -0.55
UPF1-208	ENST00000600012		H3BNX3	289 aa		11.62	□□□□□ -0.55
UPF1-208	ENST00000600012	PRRG2	O14669	202 aa		11.62	□□□□□ -0.55
UPF1-208	ENST00000600012	PRKN	O60260	465 aa	Predicted RBP	11.62	□□□□□ -0.55
UPF1-208	ENST00000600012	FKBP6	O75344	327 aa		11.62	□□□□□ -0.55
UPF1-208	ENST00000600012	NKX2-2	O95096	273 aa		11.62	□□□□□ -0.55
UPF1-208	ENST00000600012	ZNF682	O95780	498 aa		11.62	□□□□□ -0.55

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