RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 DGAT2L6Q6ZPD8 337 aa12.65□□□□□ -0.38
SHKBP1-218ENST00000598907 ZNF551Q7Z340 670 aaPredicted RBP12.65□□□□□ -0.38
SHKBP1-218ENST00000598907 B3GNT7Q8NFL0 401 aa12.65□□□□□ -0.38
SHKBP1-218ENST00000598907 ZFP28Q8NHY6 868 aa12.65□□□□□ -0.38
SHKBP1-218ENST00000598907 ZNF675Q8TD23 568 aa12.65□□□□□ -0.38
SHKBP1-218ENST00000598907 CTHRC1Q96CG8 243 aa12.65□□□□□ -0.38
SHKBP1-218ENST00000598907 ITCHQ96J02 903 aa12.65□□□□□ -0.38
SHKBP1-218ENST00000598907 BBS4Q96RK4 519 aa12.65□□□□□ -0.38
SHKBP1-218ENST00000598907 PELOQ9BRX2 385 aaKnown RBP12.65□□□□□ -0.38
SHKBP1-218ENST00000598907 INPP5KQ9BT40 448 aa12.65□□□□□ -0.38
SHKBP1-218ENST00000598907 PAIP1Q9H074 479 aaKnown RBP12.65□□□□□ -0.38
SHKBP1-218ENST00000598907 RMND5AQ9H871 391 aa12.65□□□□□ -0.38
SHKBP1-218ENST00000598907 SIRT3Q9NTG7 399 aaPredicted RBP12.65□□□□□ -0.38
SHKBP1-218ENST00000598907 YARS2Q9Y2Z4 477 aaKnown RBP12.65□□□□□ -0.38
SHKBP1-218ENST00000598907 EML6Q6ZMW3 1958 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 A0A096LPI6 279 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 TRBV5-3A0A0A0MS03 114 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 MYOCOSA0A1B0GUC4 107 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 WWP2O00308 870 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 PLOD2O00469 737 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 EBAG9O00559 213 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 ANGPT2O15123 496 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 HCN1O60741 890 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 SLITRK5O94991 958 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 NPPAP01160 153 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 EFNA1P20827 205 aaPredicted RBP12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 CALB2P22676 271 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 CDKN2CP42773 168 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 CPA2P48052 419 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 NCBP2P52298 156 aaKnown RBP eCLIP12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 MAP4K2Q12851 820 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 PRICKLE4Q2TBC4 344 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 ZNF628Q5EBL2 1059 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 HACD2Q6Y1H2 254 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 LUZP2Q86TE4 346 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 ANKRD46Q86W74 232 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 LACC1Q8IV20 430 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 GPALPP1Q8IXQ4 340 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 NCLNQ969V3 563 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 RCN3Q96D15 328 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 PIK3IP1Q96FE7 263 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 RBM24Q9BX46 236 aaKnown RBP12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 GSX2Q9BZM3 304 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 EFCAB1Q9HAE3 211 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 GALNT8Q9NY28 637 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 TAS2R9Q9NYW1 312 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 MAT2BQ9NZL9 334 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 NTMQ9P121 344 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 ZNF639Q9UID6 485 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 GMEB1Q9Y692 573 aa12.64□□□□□ -0.39
SHKBP1-218ENST00000598907 FXYD1O00168 92 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 RFXANKO14593 260 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 MRASO14807 208 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 KCNAB3O43448 404 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 ERN1O75460 977 aaKnown RBP12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 CT62P0C5K7 136 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 S1PR1P21453 382 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 CNR1P21554 472 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 CDK9P50750 372 aaKnown RBP12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 PLIN5Q00G26 463 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 FOXO1Q12778 655 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 ELAVL1Q15717 326 aaKnown RBP12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 LTB4RQ15722 352 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 C8orf82Q6P1X6 216 aaPredicted RBP12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 TMEM64Q6YI46 380 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 RTL4Q6ZR62 310 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 MSRB3Q8IXL7 192 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 PCYOX1LQ8NBM8 494 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 OR4A15Q8NGL6 344 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 OR9A2Q8NGT5 310 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 PTPMT1Q8WUK0 201 aaPredicted RBP12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 PPWD1Q96BP3 646 aaKnown RBP12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 ROPN1LQ96C74 230 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 ELP4Q96EB1 424 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 HSPBAP1Q96EW2 488 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 VMP1Q96GC9 406 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 RBM18Q96H35 190 aaKnown RBP12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 DGAT2Q96PD7 388 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 PANX1Q96RD7 426 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 RASL10BQ96S79 203 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 PIGQQ9BRB3 760 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 AMBRA1Q9C0C7 1298 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 CXorf36Q9H7Y0 433 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 CXorf21Q9HAI6 301 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 ADAP2Q9NPF8 381 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 SLC6A13Q9NSD5 602 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 SLC25A37Q9NYZ2 338 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 SLAMF8Q9P0V8 285 aa12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.63□□□□□ -0.39
SHKBP1-218ENST00000598907 NCKAP5O14513 1909 aa12.62□□□□□ -0.39
SHKBP1-218ENST00000598907 A0A087WV62 115 aa12.62□□□□□ -0.39
SHKBP1-218ENST00000598907 C15orf38-AP3S2A0A0A6YYH1 394 aa12.62□□□□□ -0.39
SHKBP1-218ENST00000598907 SIAH2O43255 324 aa12.62□□□□□ -0.39
SHKBP1-218ENST00000598907 PLOD3O60568 738 aa12.62□□□□□ -0.39
SHKBP1-218ENST00000598907 KCNH1O95259 989 aa12.62□□□□□ -0.39
SHKBP1-218ENST00000598907 CPSF4O95639 269 aaKnown RBP12.62□□□□□ -0.39
SHKBP1-218ENST00000598907 EPPINO95925 133 aa12.62□□□□□ -0.39
SHKBP1-218ENST00000598907 CCL3P10147 92 aa12.62□□□□□ -0.39
SHKBP1-218ENST00000598907 MNAT1P51948 309 aa12.62□□□□□ -0.39
SHKBP1-218ENST00000598907 FUT7Q11130 342 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms