RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 MSANTD1Q6ZTZ1 278 aa14.63□□□□□ -0.07
TRIM28-213ENST00000598355 MISPQ8IVT2 679 aa14.63□□□□□ -0.07
TRIM28-213ENST00000598355 CLEC4FQ8N1N0 589 aa14.63□□□□□ -0.07
TRIM28-213ENST00000598355 OR4K17Q8NGC6 315 aa14.63□□□□□ -0.07
TRIM28-213ENST00000598355 OR5D16Q8NGK9 328 aa14.63□□□□□ -0.07
TRIM28-213ENST00000598355 OR14L1PQ8NHC6 308 aa14.63□□□□□ -0.07
TRIM28-213ENST00000598355 ASB5Q8WWX0 329 aa14.63□□□□□ -0.07
TRIM28-213ENST00000598355 SDCCAG3Q96C92 435 aa14.63□□□□□ -0.07
TRIM28-213ENST00000598355 C1GALT1C1Q96EU7 318 aa14.63□□□□□ -0.07
TRIM28-213ENST00000598355 MARK4Q96L34 752 aa14.63□□□□□ -0.07
TRIM28-213ENST00000598355 DSN1Q9H410 356 aa14.63□□□□□ -0.07
TRIM28-213ENST00000598355 TCF7L2Q9NQB0 619 aa14.63□□□□□ -0.07
TRIM28-213ENST00000598355 DKKL1Q9UK85 242 aa14.63□□□□□ -0.07
TRIM28-213ENST00000598355 PCDHGB4Q9UN71 923 aa14.63□□□□□ -0.07
TRIM28-213ENST00000598355 CD8B2A6NJW9 211 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 DUXAA6NLW8 204 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 PRSS44E7EML9 344 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 UBDO15205 165 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 SLC22A3O75751 556 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 TOXO94900 526 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 EPPINO95925 133 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 IL6P05231 212 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 ZNF708P17019 499 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 ADH7P40394 386 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 IDH3AP50213 366 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 CLDN18P56856 261 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 TFF3Q07654 80 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 PMPCAQ10713 525 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 FUT5Q11128 374 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 STX5Q13190 355 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 CD226Q15762 336 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 GLYR1Q49A26 553 aaPredicted RBP14.62□□□□□ -0.07
TRIM28-213ENST00000598355 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.62□□□□□ -0.07
TRIM28-213ENST00000598355 NSUN5P2Q63ZY6 315 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 LACC1Q8IV20 430 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 OR9I1Q8NGQ6 314 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 ZPLD1Q8TCW7 415 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 DUSP19Q8WTR2 217 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 DYDC1Q8WWB3 177 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 UCN2Q96RP3 112 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 SDF2Q99470 211 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 TREX2Q9BQ50 279 aaPredicted RBP14.62□□□□□ -0.07
TRIM28-213ENST00000598355 EBF4Q9BQW3 602 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 CCDC28BQ9BUN5 200 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 NMUR2Q9GZQ4 415 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 ZNF350Q9GZX5 532 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 ACBD3Q9H3P7 528 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 COQ3Q9NZJ6 369 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 MED11Q9P086 117 aa14.62□□□□□ -0.07
TRIM28-213ENST00000598355 A0A0G2JNJ9 132 aa14.61□□□□□ -0.07
TRIM28-213ENST00000598355 C7orf72A4D263 438 aa14.61□□□□□ -0.07
TRIM28-213ENST00000598355 MBD3L4A6NDZ8 208 aaPredicted RBP14.61□□□□□ -0.07
TRIM28-213ENST00000598355 MBD3L3A6NE82 208 aaPredicted RBP14.61□□□□□ -0.07
TRIM28-213ENST00000598355 MBD3L5A6NJ08 208 aaPredicted RBP14.61□□□□□ -0.07
TRIM28-213ENST00000598355 KDM4EB2RXH2 506 aaPredicted RBP14.61□□□□□ -0.07
TRIM28-213ENST00000598355 FAM47E-STBD1D6RA91 191 aa14.61□□□□□ -0.07
TRIM28-213ENST00000598355 POLR3GO15318 223 aaPredicted RBP14.61□□□□□ -0.07
TRIM28-213ENST00000598355 NDUFB5O43674 189 aa14.61□□□□□ -0.07
TRIM28-213ENST00000598355 MATN1P21941 496 aa14.61□□□□□ -0.07
TRIM28-213ENST00000598355 MSX1P28360 303 aa14.61□□□□□ -0.07
TRIM28-213ENST00000598355 HTR1EP28566 365 aa14.61□□□□□ -0.07
TRIM28-213ENST00000598355 CEACAM8P31997 349 aaPredicted RBP14.61□□□□□ -0.07
TRIM28-213ENST00000598355 GCKP35557 465 aa14.61□□□□□ -0.07
TRIM28-213ENST00000598355 TIMP3P35625 211 aa14.61□□□□□ -0.07
TRIM28-213ENST00000598355 CDKN2CP42773 168 aa14.61□□□□□ -0.07
TRIM28-213ENST00000598355 BCL2A1Q16548 175 aa14.61□□□□□ -0.07
TRIM28-213ENST00000598355 ARHGAP11BQ3KRB8 267 aa14.61□□□□□ -0.07
TRIM28-213ENST00000598355 KLHL26Q53HC5 615 aa14.61□□□□□ -0.07
TRIM28-213ENST00000598355 AAGABQ6PD74 315 aa14.61□□□□□ -0.07
TRIM28-213ENST00000598355 ENPP6Q6UWR7 440 aa14.61□□□□□ -0.07
TRIM28-213ENST00000598355 MTERF4Q7Z6M4 381 aaKnown RBP14.61□□□□□ -0.07
TRIM28-213ENST00000598355 LILRB4Q8NHJ6 448 aa14.61□□□□□ -0.07
TRIM28-213ENST00000598355 MBD3L2Q8NHZ7 208 aaPredicted RBP14.61□□□□□ -0.07
TRIM28-213ENST00000598355 OIT3Q8WWZ8 545 aa14.61□□□□□ -0.07
TRIM28-213ENST00000598355 SFXN2Q96NB2 322 aa14.61□□□□□ -0.07
TRIM28-213ENST00000598355 OR52E6Q96RD3 313 aa14.61□□□□□ -0.07
TRIM28-213ENST00000598355 ZBTB18Q99592 522 aa14.61□□□□□ -0.07
TRIM28-213ENST00000598355 SLC35A5Q9BS91 424 aa14.61□□□□□ -0.07
TRIM28-213ENST00000598355 INPP5KQ9BT40 448 aa14.61□□□□□ -0.07
TRIM28-213ENST00000598355 HOXD1Q9GZZ0 328 aa14.61□□□□□ -0.07
TRIM28-213ENST00000598355 OR51I1Q9H343 314 aa14.61□□□□□ -0.07
TRIM28-213ENST00000598355 PTGES2Q9H7Z7 377 aa14.61□□□□□ -0.07
TRIM28-213ENST00000598355 CHST11Q9NPF2 352 aa14.61□□□□□ -0.07
TRIM28-213ENST00000598355 Q9UFV3 132 aa14.61□□□□□ -0.07
TRIM28-213ENST00000598355 LINC01387J3KSC0 135 aa14.6□□□□□ -0.07
TRIM28-213ENST00000598355 SCDO00767 359 aa14.6□□□□□ -0.07
TRIM28-213ENST00000598355 HCRTR2O43614 444 aa14.6□□□□□ -0.07
TRIM28-213ENST00000598355 EDF1O60869 148 aaKnown RBP14.6□□□□□ -0.07
TRIM28-213ENST00000598355 CPSF4O95639 269 aaKnown RBP14.6□□□□□ -0.07
TRIM28-213ENST00000598355 AGR2O95994 175 aa14.6□□□□□ -0.07
TRIM28-213ENST00000598355 C1QCP02747 245 aa14.6□□□□□ -0.07
TRIM28-213ENST00000598355 ZCCHC18P0CG32 403 aa14.6□□□□□ -0.07
TRIM28-213ENST00000598355 ZNF17P17021 662 aa14.6□□□□□ -0.07
TRIM28-213ENST00000598355 HOXB9P17482 250 aaPredicted RBP14.6□□□□□ -0.07
TRIM28-213ENST00000598355 IGFBP2P18065 325 aa14.6□□□□□ -0.07
TRIM28-213ENST00000598355 ATP6V1C1P21283 382 aa14.6□□□□□ -0.07
TRIM28-213ENST00000598355 ATP12AP54707 1039 aa14.6□□□□□ -0.07
TRIM28-213ENST00000598355 IRX1P78414 480 aaPredicted RBP14.6□□□□□ -0.07
TRIM28-213ENST00000598355 TXNL4AP83876 142 aaKnown RBP14.6□□□□□ -0.07
TRIM28-213ENST00000598355 RCAN2Q14206 197 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms