RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 C10orf105Q8TEF2 133 aa8.99□□□□□ -0.97
TRIM28-210ENST00000597618 ABHD3Q8WU67 409 aa8.99□□□□□ -0.97
TRIM28-210ENST00000597618 EXOSC8Q96B26 276 aaKnown RBP8.99□□□□□ -0.97
TRIM28-210ENST00000597618 ZBTB8AQ96BR9 441 aa8.99□□□□□ -0.97
TRIM28-210ENST00000597618 MUCL1Q96DR8 90 aa8.99□□□□□ -0.97
TRIM28-210ENST00000597618 HBEGFQ99075 208 aa8.99□□□□□ -0.97
TRIM28-210ENST00000597618 SHCBP1LQ9BZQ2 653 aa8.99□□□□□ -0.97
TRIM28-210ENST00000597618 TRIM31Q9BZY9 425 aa8.99□□□□□ -0.97
TRIM28-210ENST00000597618 BRF2Q9HAW0 419 aa8.99□□□□□ -0.97
TRIM28-210ENST00000597618 GP6Q9HCN6 339 aa8.99□□□□□ -0.97
TRIM28-210ENST00000597618 Q9N2J8 555 aa8.99□□□□□ -0.97
TRIM28-210ENST00000597618 CPSF2Q9P2I0 782 aaKnown RBP8.99□□□□□ -0.97
TRIM28-210ENST00000597618 SNX12Q9UMY4 172 aa8.99□□□□□ -0.97
TRIM28-210ENST00000597618 LOC100289279A0A1B0GTE1 492 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 H7C417 338 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 TCF21O43680 179 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 SLITRK5O94991 958 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 IL3P08700 152 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 GSTA2P09210 222 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 CTAGE8P0CG41 777 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 PTNP21246 168 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 MPIP34949 423 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 ZNF41P51814 821 aaPredicted RBP8.98□□□□□ -0.97
TRIM28-210ENST00000597618 ZNHIT3Q15649 155 aaPredicted RBP8.98□□□□□ -0.97
TRIM28-210ENST00000597618 ZNF239Q16600 458 aaKnown RBP8.98□□□□□ -0.97
TRIM28-210ENST00000597618 TCHHL1Q5QJ38 904 aaPredicted RBP8.98□□□□□ -0.97
TRIM28-210ENST00000597618 C12orf54Q6X4T0 127 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 Q6ZT83 130 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 C3orf62Q6ZUJ4 267 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 NUFIP2Q7Z417 695 aaKnown RBP8.98□□□□□ -0.97
TRIM28-210ENST00000597618 CTAGE4Q8IX94 777 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 FBXL14Q8N1E6 418 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 MUC15Q8N387 334 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 RFLNBQ8N5W9 214 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 PPM1NQ8N819 430 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 CEP112Q8N8E3 955 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 PTGR2Q8N8N7 351 aaPredicted RBP8.98□□□□□ -0.97
TRIM28-210ENST00000597618 SELENOMQ8WWX9 145 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 OSTF1Q92882 214 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 CPNE4Q96A23 557 aaPredicted RBP8.98□□□□□ -0.97
TRIM28-210ENST00000597618 KLHL15Q96M94 604 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 RNF145Q96MT1 663 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 DHRS9Q9BPW9 319 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 TMEM185BQ9H7F4 350 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 L2HGDHQ9H9P8 463 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 TIGARQ9NQ88 270 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 SLC35C2Q9NQQ7 365 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 FARSBQ9NSD9 589 aaKnown RBP8.98□□□□□ -0.97
TRIM28-210ENST00000597618 MCM8Q9UJA3 840 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 POU2F3Q9UKI9 436 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 PCTPQ9UKL6 214 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 SNX6Q9UNH7 406 aa8.98□□□□□ -0.97
TRIM28-210ENST00000597618 A0A087WV62 115 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 A0A0J9YW62 118 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 GOLGA8QA0A0J9YX86 632 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 A0A1W2PRB8 838 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 SLC35F4A4IF30 521 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 GOLGA8OA6NCC3 632 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 GOLGA8NF8WBI6 632 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 GOLGA8RI6L899 631 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 EIF3HO15372 352 aaKnown RBP eCLIP8.97□□□□□ -0.97
TRIM28-210ENST00000597618 NDUFB5O43674 189 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 KIAA0513O60268 411 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 KLHL2O95198 593 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 UTS2O95399 124 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 NTN1O95631 604 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 PDYNP01213 254 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 OPN1LWP04000 364 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 BMP4P12644 408 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 PSMA4P25789 261 aaKnown RBP8.97□□□□□ -0.97
TRIM28-210ENST00000597618 CFPP27918 469 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 RFX3P48380 749 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 EFNA4P52798 201 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 CARD18P57730 90 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 CSTF3Q12996 717 aaKnown RBP8.97□□□□□ -0.97
TRIM28-210ENST00000597618 NAB1Q13506 487 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 HEPACAMQ14CZ8 416 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 TIMM23BQ5SRD1 257 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 CPTPQ5TA50 214 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 BHLHB9Q6PI77 547 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 P2RY8Q86VZ1 359 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 TUSC5Q8IXB3 177 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 OR4F6Q8NGB9 312 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 ACTRT2Q8TDY3 377 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 HTRA1Q92743 480 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 BBS4Q96RK4 519 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 ADAM19Q9H013 955 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 C3orf14Q9HBI5 128 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 EML4Q9HC35 981 aaKnown RBP8.97□□□□□ -0.97
TRIM28-210ENST00000597618 MED17Q9NVC6 651 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 VPS29Q9UBQ0 182 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 TMCO1Q9UM00 188 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 NFU1Q9UMS0 254 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 MGAT4BQ9UQ53 548 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 MALRD1Q5VYJ5 2156 aa8.97□□□□□ -0.97
TRIM28-210ENST00000597618 GNG14A0A1W2PPG7 69 aa8.96□□□□□ -0.98
TRIM28-210ENST00000597618 E7EQL1 145 aa8.96□□□□□ -0.98
TRIM28-210ENST00000597618 STX16-NPEPL1H3BU86 382 aa8.96□□□□□ -0.98
TRIM28-210ENST00000597618 STX16O14662 325 aa8.96□□□□□ -0.98
TRIM28-210ENST00000597618 PCDH7O60245 1069 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms