RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 P2RX2Q9UBL9 471 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 CBLCQ9ULV8 474 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 LIPT1Q9Y234 373 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 PCDHGB3Q9Y5G1 929 aa8.68□□□□□ -1.02
TRIM28-208ENST00000597172 A8MUI8 341 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 M0QX08 132 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 WWP2O00308 870 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 GSTA4O15217 222 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 H6PDO95479 791 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 AGR2O95994 175 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 SERPINA7P05543 415 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 BCHEP06276 602 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 GUSBP08236 651 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 NR2F1P10589 423 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 KLK2P20151 261 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 ATP6V1B2P21281 511 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 AQP1P29972 269 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 KDELR2P33947 212 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 ANXA11P50995 505 aaKnown RBP8.67□□□□□ -1.02
TRIM28-208ENST00000597172 CHAF1BQ13112 559 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 GPAT3Q53EU6 434 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 CRB2Q5IJ48 1285 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 RPS26P11Q5JNZ5 115 aaPredicted RBP8.67□□□□□ -1.02
TRIM28-208ENST00000597172 DCAF10Q5QP82 559 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 ATAD3BQ5T9A4 648 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 HLA-DQA1Q5Y7H0 255 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 DESI1Q6ICB0 168 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 TYW3Q6IPR3 259 aaKnown RBP8.67□□□□□ -1.02
TRIM28-208ENST00000597172 LCN8Q6JVE9 175 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 LYPD8Q6UX82 237 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 CYP2R1Q6VVX0 501 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 FRRS1Q6ZNA5 592 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 C16orf62Q7Z3J2 963 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 DHFR2Q86XF0 187 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 SPPL2CQ8IUH8 684 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 KBTBD2Q8IY47 623 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 COX18Q8N8Q8 333 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 HIPK4Q8NE63 616 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 TNIP2Q8NFZ5 429 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 OR5L2Q8NGL0 311 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 THAP4Q8WY91 577 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 TMBIM1Q969X1 311 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 HSPBAP1Q96EW2 488 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 RMND5BQ96G75 393 aaPredicted RBP8.67□□□□□ -1.02
TRIM28-208ENST00000597172 VPS50Q96JG6 964 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 TREX2Q9BQ50 279 aaPredicted RBP8.67□□□□□ -1.02
TRIM28-208ENST00000597172 ZNF350Q9GZX5 532 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 CDCP1Q9H5V8 836 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 DENND2DQ9H6A0 471 aaPredicted RBP8.67□□□□□ -1.02
TRIM28-208ENST00000597172 Q9N2J8 555 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 MYOTQ9UBF9 498 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 KCNE5Q9UJ90 142 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 MKLN1Q9UL63 735 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 SNX13Q9Y5W8 968 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 NOTCH1P46531 2555 aa8.67□□□□□ -1.02
TRIM28-208ENST00000597172 DSPPQ9NZW4 1301 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 A0A0G2JPF8 293 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 A0A1B0GUH1 482 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 TCRBV5S2A0A599 114 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 HNRNPCL2B2RXH8 293 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 HNRNPCL3B7ZW38 293 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 C5orf58C9J3I9 102 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 NPIPB9F8W1W9 429 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 ACOX3O15254 700 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 TSPAN2O60636 221 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 STX11O75558 287 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 OR2J2O76002 312 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 MFN2O95140 757 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 IL33O95760 270 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 AK1P00568 194 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 HNRNPCL4P0DMR1 293 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 ABCD3P28288 659 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 ST13P50502 369 aaKnown RBP8.66□□□□□ -1.02
TRIM28-208ENST00000597172 CRISP3P54108 245 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 SOX8P57073 446 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 MLF1P58340 268 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 DMTNQ08495 405 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 AIMP2Q13155 320 aaKnown RBP8.66□□□□□ -1.02
TRIM28-208ENST00000597172 CCNIQ14094 377 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 KPNB1Q14974 876 aaKnown RBP8.66□□□□□ -1.02
TRIM28-208ENST00000597172 MAPK14Q16539 360 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 C1orf146Q5VVC0 180 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 PRAMEF8Q5VWM4 474 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 PRAMEF7Q5VXH5 474 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 B3GNTL1Q67FW5 361 aaPredicted RBP8.66□□□□□ -1.02
TRIM28-208ENST00000597172 FCRLBQ6BAA4 426 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 HMGN2P46Q86SG4 172 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 FJX1Q86VR8 437 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 RPS19BP1Q86WX3 136 aaKnown RBP8.66□□□□□ -1.02
TRIM28-208ENST00000597172 SLC30A8Q8IWU4 369 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 PRR22Q8IZ63 422 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 OR52E4Q8NGH9 312 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 BRIX1Q8TDN6 353 aaKnown RBP8.66□□□□□ -1.02
TRIM28-208ENST00000597172 TAMM41Q96BW9 452 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 THOC3Q96J01 351 aaKnown RBP8.66□□□□□ -1.02
TRIM28-208ENST00000597172 FER1L6-AS2Q96M78 137 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 BARD1Q99728 777 aaKnown RBP8.66□□□□□ -1.02
TRIM28-208ENST00000597172 QRSL1Q9H0R6 528 aaKnown RBP8.66□□□□□ -1.02
TRIM28-208ENST00000597172 ING2Q9H160 280 aa8.66□□□□□ -1.02
TRIM28-208ENST00000597172 MUC13Q9H3R2 512 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms