RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 HIPK4Q8NE63 616 aa13.75□□□□□ -0.21
TRIM28-207ENST00000597136 FAM110BQ8TC76 370 aa13.75□□□□□ -0.21
TRIM28-207ENST00000597136 CPT1CQ8TCG5 803 aa13.75□□□□□ -0.21
TRIM28-207ENST00000597136 FIG4Q92562 907 aa13.75□□□□□ -0.21
TRIM28-207ENST00000597136 SDF2Q99470 211 aa13.75□□□□□ -0.21
TRIM28-207ENST00000597136 TREX2Q9BQ50 279 aaPredicted RBP13.75□□□□□ -0.21
TRIM28-207ENST00000597136 MUC13Q9H3R2 512 aa13.75□□□□□ -0.21
TRIM28-207ENST00000597136 TIMMDC1Q9NPL8 285 aa13.75□□□□□ -0.21
TRIM28-207ENST00000597136 ARHGAP21Q5T5U3 1957 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 ARPC2O15144 300 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 PEX1O43933 1283 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 TSPAN2O60636 221 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 UGT2B11O75310 529 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 GCM2O75603 506 aaPredicted RBP13.74□□□□□ -0.21
TRIM28-207ENST00000597136 CIB2O75838 187 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 RASAL1O95294 804 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 PGM3O95394 542 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 ZIC2O95409 532 aaPredicted RBP13.74□□□□□ -0.21
TRIM28-207ENST00000597136 IGKV1D-16P01601 117 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 CRISP3P54108 245 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 PSPHP78330 225 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 PLCXD2Q0VAA5 305 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 RNFT1Q5M7Z0 435 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 PRAMEF20Q5VT98 475 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 PRAMEF8Q5VWM4 474 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 PRAMEF7Q5VXH5 474 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 AP1ARQ63HQ0 302 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 SLC22A10Q63ZE4 541 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 GLYATQ6IB77 296 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 FIGNL1Q6PIW4 674 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 LRRC74BQ6ZQY2 392 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 GALNT10Q86SR1 603 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 ZNF605Q86T29 641 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 DHFR2Q86XF0 187 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 GOLM1Q8NBJ4 401 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 TMEM178AQ8NBL3 297 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 HGDQ93099 445 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 EFHD2Q96C19 240 aaPredicted RBP13.74□□□□□ -0.21
TRIM28-207ENST00000597136 SGCZQ96LD1 299 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 NODALQ96S42 347 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 ADOQ96SZ5 270 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 SLC38A1Q9H2H9 487 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 RUBCNLQ9H714 662 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 BCL2L10Q9HD36 194 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 FBXO34Q9NWN3 711 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 CALML5Q9NZT1 146 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 ACTR3BQ9P1U1 418 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 MAGEL2Q9UJ55 1249 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 CNOT11Q9UKZ1 510 aaKnown RBP13.74□□□□□ -0.21
TRIM28-207ENST00000597136 ANGPT4Q9Y264 503 aa13.74□□□□□ -0.21
TRIM28-207ENST00000597136 UBR5O95071 2799 aaPredicted RBP13.74□□□□□ -0.21
TRIM28-207ENST00000597136 MPDZO75970 2070 aa13.73□□□□□ -0.21
TRIM28-207ENST00000597136 FCMRO60667 390 aa13.73□□□□□ -0.21
TRIM28-207ENST00000597136 GMNNO75496 209 aa13.73□□□□□ -0.21
TRIM28-207ENST00000597136 STX11O75558 287 aa13.73□□□□□ -0.21
TRIM28-207ENST00000597136 NAGAP17050 411 aa13.73□□□□□ -0.21
TRIM28-207ENST00000597136 CNR1P21554 472 aa13.73□□□□□ -0.21
TRIM28-207ENST00000597136 AQP1P29972 269 aa13.73□□□□□ -0.21
TRIM28-207ENST00000597136 DNASE1L1P49184 302 aa13.73□□□□□ -0.21
TRIM28-207ENST00000597136 MEOX1P50221 254 aa13.73□□□□□ -0.21
TRIM28-207ENST00000597136 PCBP3P57721 371 aaKnown RBP13.73□□□□□ -0.21
TRIM28-207ENST00000597136 DECR1Q16698 335 aa13.73□□□□□ -0.21
TRIM28-207ENST00000597136 RPS26P11Q5JNZ5 115 aaPredicted RBP13.73□□□□□ -0.21
TRIM28-207ENST00000597136 INTS11Q5TA45 600 aaKnown RBP13.73□□□□□ -0.21
TRIM28-207ENST00000597136 C1orf146Q5VVC0 180 aa13.73□□□□□ -0.21
TRIM28-207ENST00000597136 CCDC80Q76M96 950 aa13.73□□□□□ -0.21
TRIM28-207ENST00000597136 ZAR1Q86SH2 424 aa13.73□□□□□ -0.21
TRIM28-207ENST00000597136 PAQR8Q8TEZ7 354 aa13.73□□□□□ -0.21
TRIM28-207ENST00000597136 ZNF350Q9GZX5 532 aa13.73□□□□□ -0.21
TRIM28-207ENST00000597136 GORASP2Q9H8Y8 452 aa13.73□□□□□ -0.21
TRIM28-207ENST00000597136 A0A0G2JPF8 293 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 C2orf72A6NCS6 295 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 HNRNPCL2B2RXH8 293 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 HNRNPCL3B7ZW38 293 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 IL33O95760 270 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 P04436 131 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 GUSBP08236 651 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 HNRNPCL4P0DMR1 293 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 MST1P26927 711 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 KDELR2P33947 212 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 RFX3P48380 749 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 HPCAP84074 193 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 CHRNEQ04844 493 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 FLOT2Q14254 428 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 ZNF324BQ6AW86 544 aaPredicted RBP13.72□□□□□ -0.21
TRIM28-207ENST00000597136 TYW3Q6IPR3 259 aaKnown RBP13.72□□□□□ -0.21
TRIM28-207ENST00000597136 LCN8Q6JVE9 175 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 CYP2R1Q6VVX0 501 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 FRRS1Q6ZNA5 592 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 NUP54Q7Z3B4 507 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 OR2M7Q8NG81 312 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 BBS10Q8TAM1 723 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 WDR60Q8WVS4 1066 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 DIO2Q92813 273 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 FRMD6Q96NE9 622 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 BARD1Q99728 777 aaKnown RBP13.72□□□□□ -0.21
TRIM28-207ENST00000597136 G6PC3Q9BUM1 346 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 SAP130Q9H0E3 1048 aa13.72□□□□□ -0.21
TRIM28-207ENST00000597136 TSPAN10Q9H1Z9 355 aaPredicted RBP13.72□□□□□ -0.21
TRIM28-207ENST00000597136 MTHFD2LQ9H903 347 aaPredicted RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms