RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 ATP13A2Q9NQ11 1180 aa14.27□□□□□ -0.12
UPF1-204ENST00000596842 RASD1Q9Y272 281 aa14.27□□□□□ -0.12
UPF1-204ENST00000596842 RAB19A4D1S5 217 aa14.27□□□□□ -0.13
UPF1-204ENST00000596842 AIFM1O95831 613 aa14.27□□□□□ -0.13
UPF1-204ENST00000596842 DRD5P21918 477 aa14.27□□□□□ -0.13
UPF1-204ENST00000596842 SSTR2P30874 369 aa14.27□□□□□ -0.13
UPF1-204ENST00000596842 EVX1P49640 407 aa14.27□□□□□ -0.13
UPF1-204ENST00000596842 PDX1P52945 283 aa14.27□□□□□ -0.13
UPF1-204ENST00000596842 TPBGQ13641 420 aa14.27□□□□□ -0.13
UPF1-204ENST00000596842 FCN2Q15485 313 aa14.27□□□□□ -0.13
UPF1-204ENST00000596842 CXXC5Q7LFL8 322 aaKnown RBP14.27□□□□□ -0.13
UPF1-204ENST00000596842 OR5K2Q8NHB8 316 aa14.27□□□□□ -0.13
UPF1-204ENST00000596842 GRHL3Q8TE85 626 aa14.27□□□□□ -0.13
UPF1-204ENST00000596842 C4orf51C9J302 202 aa14.27□□□□□ -0.13
UPF1-204ENST00000596842 CXCL10P02778 98 aa14.27□□□□□ -0.13
UPF1-204ENST00000596842 ZNF250P15622 560 aa14.27□□□□□ -0.13
UPF1-204ENST00000596842 PRR5P85299 388 aa14.27□□□□□ -0.13
UPF1-204ENST00000596842 RPA4Q13156 261 aa14.27□□□□□ -0.13
UPF1-204ENST00000596842 MTSS1LQ765P7 747 aa14.27□□□□□ -0.13
UPF1-204ENST00000596842 LUZP2Q86TE4 346 aa14.27□□□□□ -0.13
UPF1-204ENST00000596842 NRSN1Q8IZ57 195 aa14.27□□□□□ -0.13
UPF1-204ENST00000596842 GLTPQ9NZD2 209 aa14.27□□□□□ -0.13
UPF1-204ENST00000596842 SF3B6Q9Y3B4 125 aaKnown RBP14.27□□□□□ -0.13
UPF1-204ENST00000596842 OTOL1A6NHN0 477 aaPredicted RBP14.26□□□□□ -0.13
UPF1-204ENST00000596842 CHURC1-FNTBB4DL54 471 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 CDC42EP2O14613 210 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 PEX14O75381 377 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 PAPLNO95428 1278 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 RPN2P04844 631 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 PEPDP12955 493 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 CSNK2A2P19784 350 aaPredicted RBP14.26□□□□□ -0.13
UPF1-204ENST00000596842 PPM1AP35813 382 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 BCL6P41182 706 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 GZMKP49863 264 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 BNC1Q01954 994 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 GRM7Q14831 915 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 TOR2AQ5JU69 321 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 ANKRD54Q6NXT1 300 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 RAB42Q8N4Z0 105 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 KCT2Q8NC54 265 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 ZBTB44Q8NCP5 570 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 OR4M1Q8NGD0 313 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 INSM2Q96T92 566 aaPredicted RBP14.26□□□□□ -0.13
UPF1-204ENST00000596842 WSB2Q9NYS7 404 aaPredicted RBP14.26□□□□□ -0.13
UPF1-204ENST00000596842 NCKAP1Q9Y2A7 1128 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 ZNF780BQ9Y6R6 833 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 CEP290O15078 2479 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 LRIT2A6NDA9 550 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 CLUP10909 449 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 SIM1P81133 766 aaPredicted RBP14.26□□□□□ -0.13
UPF1-204ENST00000596842 LRRC17Q8N6Y2 441 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 TMEM99Q8N816 258 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 CDS1Q92903 461 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 IFT27Q9BW83 186 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 BTBD1Q9H0C5 482 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 SLC28A3Q9HAS3 691 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 MBNL1Q9NR56 388 aaKnown RBP14.26□□□□□ -0.13
UPF1-204ENST00000596842 ADAM30Q9UKF2 790 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 CHST2Q9Y4C5 530 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 NOTCH4Q99466 2003 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 TMEM129A0AVI4 362 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 BMP7P18075 431 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 TBXA2RP21731 343 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 CAPZA2P47755 286 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 ANXA11P50995 505 aaKnown RBP14.26□□□□□ -0.13
UPF1-204ENST00000596842 HCCSP53701 268 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 RRAS2P62070 204 aaPredicted RBP14.26□□□□□ -0.13
UPF1-204ENST00000596842 DEFA5Q01523 94 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 AGERQ15109 404 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 CEACAM19Q7Z692 300 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 ADGRD2Q7Z7M1 963 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 RIPOR3Q96MK2 946 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 THAP7Q9BT49 309 aaPredicted RBP14.26□□□□□ -0.13
UPF1-204ENST00000596842 ALG8Q9BVK2 526 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 RNF32Q9H0A6 362 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 SLC23A1Q9UHI7 598 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 MKL2Q9ULH7 1088 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 SIRT4Q9Y6E7 314 aaPredicted RBP14.26□□□□□ -0.13
UPF1-204ENST00000596842 SZT2Q5T011 3432 aa14.26□□□□□ -0.13
UPF1-204ENST00000596842 MOSPD3O75425 235 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 TSPAN31Q12999 210 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 ZNF234Q14588 700 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 ZC3H14Q6PJT7 736 aaKnown RBP14.25□□□□□ -0.13
UPF1-204ENST00000596842 ERN2Q76MJ5 926 aaKnown RBP14.25□□□□□ -0.13
UPF1-204ENST00000596842 OR2T33Q8NG76 320 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 OR4E2Q8NGC2 313 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 SLC41A3Q96GZ6 507 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 TMEM43Q9BTV4 400 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 ACOXLQ9NUZ1 547 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 SNRNP200O75643 2136 aaKnown RBP14.25□□□□□ -0.13
UPF1-204ENST00000596842 ASGR2P07307 311 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 PRG2P13727 222 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 ITGB8P26012 769 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 MPIP34949 423 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 CTNNB1P35222 781 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 GPR176Q14439 515 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 ZNF77Q15935 545 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 SLC39A5Q6ZMH5 540 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 RELTQ969Z4 430 aa14.25□□□□□ -0.13
UPF1-204ENST00000596842 ORAI1Q96D31 301 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms