RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 MBD3L3A6NE82 208 aaPredicted RBP13.68□□□□□ -0.22
TRIM28-205ENST00000595028 MBD3L5A6NJ08 208 aaPredicted RBP13.68□□□□□ -0.22
TRIM28-205ENST00000595028 RNASET2O00584 256 aaKnown RBP13.68□□□□□ -0.22
TRIM28-205ENST00000595028 HDAC3O15379 428 aa13.68□□□□□ -0.22
TRIM28-205ENST00000595028 ZNF708P17019 499 aa13.68□□□□□ -0.22
TRIM28-205ENST00000595028 TBXA2RP21731 343 aa13.68□□□□□ -0.22
TRIM28-205ENST00000595028 CHMP24386 653 aa13.68□□□□□ -0.22
TRIM28-205ENST00000595028 TIMP3P35625 211 aa13.68□□□□□ -0.22
TRIM28-205ENST00000595028 CLDN18P56856 261 aa13.68□□□□□ -0.22
TRIM28-205ENST00000595028 OCRLQ01968 901 aa13.68□□□□□ -0.22
TRIM28-205ENST00000595028 CCNJQ5T5M9 372 aa13.68□□□□□ -0.22
TRIM28-205ENST00000595028 RAET1LQ5VY80 246 aa13.68□□□□□ -0.22
TRIM28-205ENST00000595028 MED12LQ86YW9 2145 aa13.68□□□□□ -0.22
TRIM28-205ENST00000595028 CLECL1Q8IZS7 167 aa13.68□□□□□ -0.22
TRIM28-205ENST00000595028 RELL2Q8NC24 303 aaPredicted RBP13.68□□□□□ -0.22
TRIM28-205ENST00000595028 OR5AK3PQ8NH89 298 aa13.68□□□□□ -0.22
TRIM28-205ENST00000595028 MBD3L2Q8NHZ7 208 aaPredicted RBP13.68□□□□□ -0.22
TRIM28-205ENST00000595028 DUSP19Q8WTR2 217 aa13.68□□□□□ -0.22
TRIM28-205ENST00000595028 ARL8AQ96BM9 186 aa13.68□□□□□ -0.22
TRIM28-205ENST00000595028 C1GALT1C1Q96EU7 318 aa13.68□□□□□ -0.22
TRIM28-205ENST00000595028 TUBA1CQ9BQE3 449 aa13.68□□□□□ -0.22
TRIM28-205ENST00000595028 G6PC3Q9BUM1 346 aa13.68□□□□□ -0.22
TRIM28-205ENST00000595028 PTGES2Q9H7Z7 377 aa13.68□□□□□ -0.22
TRIM28-205ENST00000595028 FBXO34Q9NWN3 711 aa13.68□□□□□ -0.22
TRIM28-205ENST00000595028 FAF1Q9UNN5 650 aaPredicted RBP13.68□□□□□ -0.22
TRIM28-205ENST00000595028 RNF103-CHMP3A0A140T963 221 aa13.67□□□□□ -0.22
TRIM28-205ENST00000595028 TRPC5OSA6NMA1 111 aa13.67□□□□□ -0.22
TRIM28-205ENST00000595028 DVL2O14641 736 aa13.67□□□□□ -0.22
TRIM28-205ENST00000595028 IL2RAP01589 272 aa13.67□□□□□ -0.22
TRIM28-205ENST00000595028 ALDOCP09972 364 aaKnown RBP13.67□□□□□ -0.22
TRIM28-205ENST00000595028 HOXB4P17483 251 aaPredicted RBP13.67□□□□□ -0.22
TRIM28-205ENST00000595028 HK1P19367 917 aa13.67□□□□□ -0.22
TRIM28-205ENST00000595028 STARP49675 285 aa13.67□□□□□ -0.22
TRIM28-205ENST00000595028 ZNF136P52737 540 aa13.67□□□□□ -0.22
TRIM28-205ENST00000595028 CLNS1AP54105 237 aaKnown RBP13.67□□□□□ -0.22
TRIM28-205ENST00000595028 SRYQ05066 204 aa13.67□□□□□ -0.22
TRIM28-205ENST00000595028 C17orf67Q0P5P2 114 aa13.67□□□□□ -0.22
TRIM28-205ENST00000595028 DPY19L1Q2PZI1 675 aa13.67□□□□□ -0.22
TRIM28-205ENST00000595028 DCST2Q5T1A1 773 aa13.67□□□□□ -0.22
TRIM28-205ENST00000595028 BHLHB9Q6PI77 547 aa13.67□□□□□ -0.22
TRIM28-205ENST00000595028 ADGRE4PQ86SQ3 457 aa13.67□□□□□ -0.22
TRIM28-205ENST00000595028 ZNF295-AS1Q8N0V1 137 aa13.67□□□□□ -0.22
TRIM28-205ENST00000595028 OR4C3Q8NH37 302 aa13.67□□□□□ -0.22
TRIM28-205ENST00000595028 ADAMTS15Q8TE58 950 aa13.67□□□□□ -0.22
TRIM28-205ENST00000595028 MANSC1Q9H8J5 431 aa13.67□□□□□ -0.22
TRIM28-205ENST00000595028 CALHM2Q9HA72 323 aa13.67□□□□□ -0.22
TRIM28-205ENST00000595028 HHATLQ9HCP6 504 aa13.67□□□□□ -0.22
TRIM28-205ENST00000595028 UBQLN4Q9NRR5 601 aa13.67□□□□□ -0.22
TRIM28-205ENST00000595028 AIG1Q9NVV5 245 aa13.67□□□□□ -0.22
TRIM28-205ENST00000595028 MAP1AP78559 2803 aaPredicted RBP13.66□□□□□ -0.22
TRIM28-205ENST00000595028 CLCA1A8K7I4 914 aa13.66□□□□□ -0.22
TRIM28-205ENST00000595028 E9PBE3 544 aa13.66□□□□□ -0.22
TRIM28-205ENST00000595028 KLF11O14901 512 aa13.66□□□□□ -0.22
TRIM28-205ENST00000595028 NDUFB5O43674 189 aa13.66□□□□□ -0.22
TRIM28-205ENST00000595028 SCN2BO60939 215 aa13.66□□□□□ -0.22
TRIM28-205ENST00000595028 KITP10721 976 aa13.66□□□□□ -0.22
TRIM28-205ENST00000595028 BMP5P22003 454 aa13.66□□□□□ -0.22
TRIM28-205ENST00000595028 EPHA3P29320 983 aa13.66□□□□□ -0.22
TRIM28-205ENST00000595028 RPS26P62854 115 aaKnown RBP13.66□□□□□ -0.22
TRIM28-205ENST00000595028 SPANXN4Q5MJ08 99 aa13.66□□□□□ -0.22
TRIM28-205ENST00000595028 ANKRD46Q86W74 232 aa13.66□□□□□ -0.22
TRIM28-205ENST00000595028 WDR75Q8IWA0 830 aaKnown RBP13.66□□□□□ -0.22
TRIM28-205ENST00000595028 C9orf106Q8NAJ2 232 aa13.66□□□□□ -0.22
TRIM28-205ENST00000595028 GATSQ8NAP1 163 aa13.66□□□□□ -0.22
TRIM28-205ENST00000595028 OR4A15Q8NGL6 344 aa13.66□□□□□ -0.22
TRIM28-205ENST00000595028 SLC35G5Q96KT7 338 aa13.66□□□□□ -0.22
TRIM28-205ENST00000595028 UCN2Q96RP3 112 aa13.66□□□□□ -0.22
TRIM28-205ENST00000595028 SERHL2Q9H4I8 314 aa13.66□□□□□ -0.22
TRIM28-205ENST00000595028 WDR55Q9H6Y2 383 aaPredicted RBP13.66□□□□□ -0.22
TRIM28-205ENST00000595028 CLCF1Q9UBD9 225 aa13.66□□□□□ -0.22
TRIM28-205ENST00000595028 ZNF469Q96JG9 3925 aaPredicted RBP13.65□□□□□ -0.22
TRIM28-205ENST00000595028 GOLGA8QA0A0J9YX86 632 aa13.65□□□□□ -0.22
TRIM28-205ENST00000595028 PRSS51A0A1B0GVH4 220 aa13.65□□□□□ -0.22
TRIM28-205ENST00000595028 A0A1W2PQD3 144 aa13.65□□□□□ -0.22
TRIM28-205ENST00000595028 OR2M5A3KFT3 312 aa13.65□□□□□ -0.22
TRIM28-205ENST00000595028 GOLGA8OA6NCC3 632 aa13.65□□□□□ -0.22
TRIM28-205ENST00000595028 GOLGA8NF8WBI6 632 aa13.65□□□□□ -0.22
TRIM28-205ENST00000595028 SLCO1B7G3V0H7 640 aa13.65□□□□□ -0.22
TRIM28-205ENST00000595028 LINC01387J3KSC0 135 aa13.65□□□□□ -0.22
TRIM28-205ENST00000595028 SCDO00767 359 aa13.65□□□□□ -0.22
TRIM28-205ENST00000595028 HCRTR2O43614 444 aa13.65□□□□□ -0.22
TRIM28-205ENST00000595028 SOX30O94993 753 aa13.65□□□□□ -0.22
TRIM28-205ENST00000595028 PEPDP12955 493 aa13.65□□□□□ -0.22
TRIM28-205ENST00000595028 HPGDP15428 266 aa13.65□□□□□ -0.22
TRIM28-205ENST00000595028 ATP6V1C1P21283 382 aa13.65□□□□□ -0.22
TRIM28-205ENST00000595028 SSTR2P30874 369 aa13.65□□□□□ -0.22
TRIM28-205ENST00000595028 ASCL1P50553 236 aa13.65□□□□□ -0.22
TRIM28-205ENST00000595028 PHC1P78364 1004 aa13.65□□□□□ -0.22
TRIM28-205ENST00000595028 CD226Q15762 336 aa13.65□□□□□ -0.22
TRIM28-205ENST00000595028 BCL2A1Q16548 175 aa13.65□□□□□ -0.22
TRIM28-205ENST00000595028 FAM174BQ3ZCQ3 159 aa13.65□□□□□ -0.22
TRIM28-205ENST00000595028 GLYR1Q49A26 553 aaPredicted RBP13.65□□□□□ -0.22
TRIM28-205ENST00000595028 ANXA8L1Q5VT79 327 aa13.65□□□□□ -0.22
TRIM28-205ENST00000595028 POMZP3Q6PJE2 187 aa13.65□□□□□ -0.22
TRIM28-205ENST00000595028 MAVSQ7Z434 540 aa13.65□□□□□ -0.22
TRIM28-205ENST00000595028 SPATA19Q7Z5L4 167 aa13.65□□□□□ -0.22
TRIM28-205ENST00000595028 MISPQ8IVT2 679 aa13.65□□□□□ -0.22
TRIM28-205ENST00000595028 DMRTC2Q8IXT2 367 aaPredicted RBP13.65□□□□□ -0.22
TRIM28-205ENST00000595028 OR5D16Q8NGK9 328 aa13.65□□□□□ -0.22
TRIM28-205ENST00000595028 C14orf79Q96F83 325 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms