RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 A0A087WZY1 265 aa11.3□□□□□ -0.6
SS18-219ENST00000581570 EIF3HO15372 352 aaKnown RBP eCLIP11.3□□□□□ -0.6
SS18-219ENST00000581570 SPRY1O43609 319 aaPredicted RBP11.3□□□□□ -0.6
SS18-219ENST00000581570 KLHL2O95198 593 aa11.3□□□□□ -0.6
SS18-219ENST00000581570 UTS2O95399 124 aa11.3□□□□□ -0.6
SS18-219ENST00000581570 GSTA2P09210 222 aa11.3□□□□□ -0.6
SS18-219ENST00000581570 USF1P22415 310 aaPredicted RBP11.3□□□□□ -0.6
SS18-219ENST00000581570 MPIP34949 423 aa11.3□□□□□ -0.6
SS18-219ENST00000581570 GZMKP49863 264 aa11.3□□□□□ -0.6
SS18-219ENST00000581570 PSMD4P55036 377 aaKnown RBP11.3□□□□□ -0.6
SS18-219ENST00000581570 CARD18P57730 90 aa11.3□□□□□ -0.6
SS18-219ENST00000581570 LSM11P83369 360 aaKnown RBP eCLIP11.3□□□□□ -0.6
SS18-219ENST00000581570 CSTF3Q12996 717 aaKnown RBP11.3□□□□□ -0.6
SS18-219ENST00000581570 ITGADQ13349 1161 aa11.3□□□□□ -0.6
SS18-219ENST00000581570 P2RY6Q15077 328 aa11.3□□□□□ -0.6
SS18-219ENST00000581570 STK11Q15831 433 aa11.3□□□□□ -0.6
SS18-219ENST00000581570 GGTA1PQ4G0N0 100 aa11.3□□□□□ -0.6
SS18-219ENST00000581570 FAM120AOSQ5T036 256 aa11.3□□□□□ -0.6
SS18-219ENST00000581570 CPTPQ5TA50 214 aa11.3□□□□□ -0.6
SS18-219ENST00000581570 FAM166AQ6J272 317 aa11.3□□□□□ -0.6
SS18-219ENST00000581570 APOOLQ6UXV4 268 aa11.3□□□□□ -0.6
SS18-219ENST00000581570 BHLHA15Q7RTS1 189 aaPredicted RBP11.3□□□□□ -0.6
SS18-219ENST00000581570 TUSC5Q8IXB3 177 aa11.3□□□□□ -0.6
SS18-219ENST00000581570 GTPBP8Q8N3Z3 284 aaPredicted RBP11.3□□□□□ -0.6
SS18-219ENST00000581570 ABHD3Q8WU67 409 aa11.3□□□□□ -0.6
SS18-219ENST00000581570 HTRA1Q92743 480 aa11.3□□□□□ -0.6
SS18-219ENST00000581570 REXO5Q96IC2 774 aaKnown RBP11.3□□□□□ -0.6
SS18-219ENST00000581570 NPAS1Q99742 590 aa11.3□□□□□ -0.6
SS18-219ENST00000581570 TMEM185BQ9H7F4 350 aa11.3□□□□□ -0.6
SS18-219ENST00000581570 Q9N2J8 555 aa11.3□□□□□ -0.6
SS18-219ENST00000581570 SLC35C2Q9NQQ7 365 aa11.3□□□□□ -0.6
SS18-219ENST00000581570 CBLN4Q9NTU7 201 aa11.3□□□□□ -0.6
SS18-219ENST00000581570 MCM8Q9UJA3 840 aa11.3□□□□□ -0.6
SS18-219ENST00000581570 PCTPQ9UKL6 214 aa11.3□□□□□ -0.6
SS18-219ENST00000581570 SNX6Q9UNH7 406 aa11.3□□□□□ -0.6
SS18-219ENST00000581570 SLC35F4A4IF30 521 aa11.29□□□□□ -0.6
SS18-219ENST00000581570 ABCD4O14678 606 aa11.29□□□□□ -0.6
SS18-219ENST00000581570 HNF1AP20823 631 aa11.29□□□□□ -0.6
SS18-219ENST00000581570 ME2P23368 584 aa11.29□□□□□ -0.6
SS18-219ENST00000581570 TTKP33981 857 aa11.29□□□□□ -0.6
SS18-219ENST00000581570 PRR5P85299 388 aa11.29□□□□□ -0.6
SS18-219ENST00000581570 SQLEQ14534 574 aa11.29□□□□□ -0.6
SS18-219ENST00000581570 PPA1Q15181 289 aa11.29□□□□□ -0.6
SS18-219ENST00000581570 RNPS1Q15287 305 aaKnown RBP11.29□□□□□ -0.6
SS18-219ENST00000581570 C11orf71Q6IPW1 123 aa11.29□□□□□ -0.6
SS18-219ENST00000581570 RNF128Q8TEB7 428 aa11.29□□□□□ -0.6
SS18-219ENST00000581570 C10orf105Q8TEF2 133 aa11.29□□□□□ -0.6
SS18-219ENST00000581570 SLC9A6Q92581 669 aa11.29□□□□□ -0.6
SS18-219ENST00000581570 ZBTB8AQ96BR9 441 aa11.29□□□□□ -0.6
SS18-219ENST00000581570 MUCL1Q96DR8 90 aa11.29□□□□□ -0.6
SS18-219ENST00000581570 RADILQ96JH8 1075 aa11.29□□□□□ -0.6
SS18-219ENST00000581570 RNF145Q96MT1 663 aa11.29□□□□□ -0.6
SS18-219ENST00000581570 GPR78Q96P69 363 aa11.29□□□□□ -0.6
SS18-219ENST00000581570 BBS4Q96RK4 519 aa11.29□□□□□ -0.6
SS18-219ENST00000581570 KLHL13Q9P2N7 655 aa11.29□□□□□ -0.6
SS18-219ENST00000581570 VPS29Q9UBQ0 182 aa11.29□□□□□ -0.6
SS18-219ENST00000581570 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.28□□□□□ -0.61e-8■■■■□ 23.5
SS18-219ENST00000581570 A0A087WV62 115 aa11.28□□□□□ -0.6
SS18-219ENST00000581570 A0A096LPK6 155 aa11.28□□□□□ -0.6
SS18-219ENST00000581570 LOC100289279A0A1B0GTE1 492 aa11.28□□□□□ -0.6
SS18-219ENST00000581570 A0A1W2PRB8 838 aa11.28□□□□□ -0.6
SS18-219ENST00000581570 ZNF814B7Z6K7 855 aa11.28□□□□□ -0.6
SS18-219ENST00000581570 E7EQL1 145 aa11.28□□□□□ -0.6
SS18-219ENST00000581570 STX16-NPEPL1H3BU86 382 aa11.28□□□□□ -0.6
SS18-219ENST00000581570 STX16O14662 325 aa11.28□□□□□ -0.6
SS18-219ENST00000581570 TCP1P17987 556 aaKnown RBP11.28□□□□□ -0.6
SS18-219ENST00000581570 PSMA4P25789 261 aaKnown RBP11.28□□□□□ -0.6
SS18-219ENST00000581570 HEPACAMQ14CZ8 416 aa11.28□□□□□ -0.6
SS18-219ENST00000581570 ZNHIT3Q15649 155 aaPredicted RBP11.28□□□□□ -0.6
SS18-219ENST00000581570 ZNF239Q16600 458 aaKnown RBP11.28□□□□□ -0.6
SS18-219ENST00000581570 GRAMD1BQ3KR37 738 aa11.28□□□□□ -0.6
SS18-219ENST00000581570 TECRLQ5HYJ1 363 aa11.28□□□□□ -0.6
SS18-219ENST00000581570 UBAP2Q5T6F2 1119 aaKnown RBP11.28□□□□□ -0.6
SS18-219ENST00000581570 MROH9Q5TGP6 573 aa11.28□□□□□ -0.6
SS18-219ENST00000581570 LETMD1Q6P1Q0 360 aa11.28□□□□□ -0.6
SS18-219ENST00000581570 Q6ZSR9 355 aa11.28□□□□□ -0.6
SS18-219ENST00000581570 TDRPQ86YL5 185 aa11.28□□□□□ -0.6
SS18-219ENST00000581570 FBXL14Q8N1E6 418 aa11.28□□□□□ -0.6
SS18-219ENST00000581570 MUC15Q8N387 334 aa11.28□□□□□ -0.6
SS18-219ENST00000581570 CDYL2Q8N8U2 506 aa11.28□□□□□ -0.6
SS18-219ENST00000581570 OR2W6PQ8NHA6 318 aa11.28□□□□□ -0.6
SS18-219ENST00000581570 FBF1Q8TES7 1133 aa11.28□□□□□ -0.6
SS18-219ENST00000581570 KLHL15Q96M94 604 aa11.28□□□□□ -0.6
SS18-219ENST00000581570 DHRS9Q9BPW9 319 aa11.28□□□□□ -0.6
SS18-219ENST00000581570 HHATLQ9HCP6 504 aa11.28□□□□□ -0.6
SS18-219ENST00000581570 TIGARQ9NQ88 270 aa11.28□□□□□ -0.6
SS18-219ENST00000581570 MED17Q9NVC6 651 aa11.28□□□□□ -0.6
SS18-219ENST00000581570 DMGDHQ9UI17 866 aaKnown RBP11.28□□□□□ -0.6
SS18-219ENST00000581570 POU2F3Q9UKI9 436 aa11.28□□□□□ -0.6
SS18-219ENST00000581570 C19orf53Q9UNZ5 99 aaPredicted RBP11.28□□□□□ -0.6
SS18-219ENST00000581570 ALPK2Q86TB3 2170 aa11.27□□□□□ -0.6
SS18-219ENST00000581570 GNG14A0A1W2PPG7 69 aa11.27□□□□□ -0.61
SS18-219ENST00000581570 C7orf72A4D263 438 aa11.27□□□□□ -0.61
SS18-219ENST00000581570 PPP6CO00743 305 aa11.27□□□□□ -0.61
SS18-219ENST00000581570 PCDH7O60245 1069 aa11.27□□□□□ -0.61
SS18-219ENST00000581570 LYZL6O75951 148 aa11.27□□□□□ -0.61
SS18-219ENST00000581570 PRKD3O94806 890 aa11.27□□□□□ -0.61
SS18-219ENST00000581570 OTCP00480 354 aa11.27□□□□□ -0.61
SS18-219ENST00000581570 YES1P07947 543 aa11.27□□□□□ -0.61
SS18-219ENST00000581570 CSF3P09919 207 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms