RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 IGHV4-30-4P0DP06 118 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 RALBP11234 206 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 GP9P14770 177 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 ACKR3P25106 362 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 PTBP1P26599 531 aaKnown RBP eCLIP5.12□□□□□ -1.594e-7■■■■■ 29.2
VPS53-219ENST00000576019 CFPP27918 469 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 MPGP29372 298 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 P2RY2P41231 377 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 CD151P48509 253 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 HSPA14Q0VDF9 509 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 RBM39Q14498 530 aaKnown RBP5.12□□□□□ -1.59
VPS53-219ENST00000576019 DMC1Q14565 340 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 SSX2Q16385 188 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 ZSWIM7Q19AV6 140 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 LSM12Q3MHD2 195 aaKnown RBP5.12□□□□□ -1.59
VPS53-219ENST00000576019 DCAF4L1Q3SXM0 396 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 XKR3Q5GH77 459 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 CLLU1OSQ5K130 101 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 SLC35D3Q5M8T2 416 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 ASB18Q6ZVZ8 466 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 TRMT11Q7Z4G4 463 aaKnown RBP5.12□□□□□ -1.59
VPS53-219ENST00000576019 BIVMQ86UB2 503 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 ECHDC2Q86YB7 292 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 RCOR2Q8IZ40 523 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 LSMEM2Q8N112 164 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 MLKLQ8NB16 471 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 WDR36Q8NI36 951 aaKnown RBP5.12□□□□□ -1.59
VPS53-219ENST00000576019 GPR148Q8TDV2 347 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 PHLDA1Q8WV24 401 aaPredicted RBP5.12□□□□□ -1.59
VPS53-219ENST00000576019 DNAJA4Q8WW22 397 aaPredicted RBP5.12□□□□□ -1.59
VPS53-219ENST00000576019 SLC35C1Q96A29 364 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 AGAP3Q96P47 875 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 NEDD4LQ96PU5 975 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 LZTS2Q9BRK4 669 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 TRIM9Q9C026 710 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 STMN4Q9H169 189 aaPredicted RBP5.12□□□□□ -1.59
VPS53-219ENST00000576019 ADNPQ9H2P0 1102 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 FAM124BQ9H5Z6 455 aaPredicted RBP5.12□□□□□ -1.59
VPS53-219ENST00000576019 SGK2Q9HBY8 427 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 SUN2Q9UH99 717 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 ZNF346Q9UL40 294 aaKnown RBP5.12□□□□□ -1.59
VPS53-219ENST00000576019 CDH9Q9ULB4 789 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 TRAF3IP3Q9Y228 551 aa5.12□□□□□ -1.59
VPS53-219ENST00000576019 GREB1LQ9C091 1923 aaPredicted RBP5.12□□□□□ -1.59
VPS53-219ENST00000576019 KIAA1549LQ6ZVL6 1849 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 ESPL1Q14674 2120 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 TRAV26-1A0A087WT03 109 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 A0A1B0GVT2 93 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 SMIM35A0A1B0GVV1 85 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 FAM240BA0A1B0GVZ2 78 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 HEATR9A2RTY3 570 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 POLR2DO15514 142 aaKnown RBP5.11□□□□□ -1.59
VPS53-219ENST00000576019 RGS14O43566 566 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 CNOT3O75175 753 aaKnown RBP5.11□□□□□ -1.59
VPS53-219ENST00000576019 SAP30O75446 220 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 SERPINI2O75830 405 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 ANP32DO95626 131 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 KRT7P08729 469 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 OR8G3PP0DMU2 310 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 HOXA9P31269 272 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 AHRP35869 848 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 MAGEA1P43355 309 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 AMTP48728 403 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 MLLT10P55197 1068 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 CDH11P55287 796 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 SEC61GP60059 68 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 NAAAQ02083 359 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 ACY1Q03154 408 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 SLC20A2Q08357 652 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 NCBP1Q09161 790 aaKnown RBP5.11□□□□□ -1.59
VPS53-219ENST00000576019 GTF2H2Q13888 395 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 PTGR1Q14914 329 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 OR1C1Q15619 314 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 PCK2Q16822 640 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 LRRC37A5PQ49AS3 106 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 LINC01620Q4KN68 170 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 FAM78AQ5JUQ0 283 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 CARD17Q5XLA6 110 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 LRRC66Q68CR7 880 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 ATL3Q6DD88 541 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 GTF2H2CQ6P1K8 395 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 FAM171BQ6P995 826 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 WASH2PQ6VEQ5 465 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 Q6ZPB1 254 aaPredicted RBP5.11□□□□□ -1.59
VPS53-219ENST00000576019 DPY19L4Q7Z388 723 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 GOLGA7Q7Z5G4 137 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 TMEM123Q8N131 208 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 PGBD5Q8N414 524 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 DNAJC22Q8N4W6 341 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 ARFGAP2Q8N6H7 521 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 RELL2Q8NC24 303 aaPredicted RBP5.11□□□□□ -1.59
VPS53-219ENST00000576019 DDHD1Q8NEL9 900 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 BPIFCQ8NFQ6 507 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 OR52N5Q8NH56 324 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 PDCD6IPQ8WUM4 868 aaKnown RBP5.11□□□□□ -1.59
VPS53-219ENST00000576019 SPRYD4Q8WW59 207 aaPredicted RBP5.11□□□□□ -1.59
VPS53-219ENST00000576019 TANKQ92844 425 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 MTBPQ96DY7 904 aa5.11□□□□□ -1.59
VPS53-219ENST00000576019 ZNF274Q96GC6 653 aaPredicted RBP5.11□□□□□ -1.59
VPS53-219ENST00000576019 MBOAT7Q96N66 472 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms