RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 NDRG2Q9UN36 371 aaKnown RBP21.21■□□□□ 0.99
VPS53-211ENST00000571805 FAM183AA6NL82 134 aa21.21■□□□□ 0.99
VPS53-211ENST00000571805 B4DXG7 233 aa21.21■□□□□ 0.99
VPS53-211ENST00000571805 TRAPPC2P0DI81 140 aa21.21■□□□□ 0.99
VPS53-211ENST00000571805 TRAPPC2BP0DI82 140 aa21.21■□□□□ 0.99
VPS53-211ENST00000571805 TNFRSF4P43489 277 aa21.21■□□□□ 0.99
VPS53-211ENST00000571805 GCGRP47871 477 aa21.21■□□□□ 0.99
VPS53-211ENST00000571805 FXYD6P3P58550 94 aa21.21■□□□□ 0.99
VPS53-211ENST00000571805 SUZ12Q15022 739 aaKnown RBP21.21■□□□□ 0.99
VPS53-211ENST00000571805 TRMT12Q53H54 448 aaKnown RBP21.21■□□□□ 0.99
VPS53-211ENST00000571805 VWA5B2Q8N398 1253 aa21.21■□□□□ 0.99
VPS53-211ENST00000571805 ZNF784Q8NCA9 323 aaPredicted RBP21.21■□□□□ 0.99
VPS53-211ENST00000571805 CCL4L1Q8NHW4 92 aa21.21■□□□□ 0.99
VPS53-211ENST00000571805 RIPOR3Q96MK2 946 aa21.21■□□□□ 0.99
VPS53-211ENST00000571805 MYADMQ96S97 322 aa21.21■□□□□ 0.99
VPS53-211ENST00000571805 SCN2AQ99250 2005 aa21.2■□□□□ 0.98
VPS53-211ENST00000571805 TRBV23OR9-2A0A075B6M9 112 aa21.2■□□□□ 0.98
VPS53-211ENST00000571805 CCDC182A6NF36 153 aa21.2■□□□□ 0.98
VPS53-211ENST00000571805 HPGDSO60760 199 aa21.2■□□□□ 0.98
VPS53-211ENST00000571805 NCR1O76036 304 aa21.2■□□□□ 0.98
VPS53-211ENST00000571805 THBS1P07996 1170 aa21.2■□□□□ 0.98
VPS53-211ENST00000571805 PRG2P13727 222 aa21.2■□□□□ 0.98
VPS53-211ENST00000571805 KIR2DL3P43628 341 aa21.2■□□□□ 0.98
VPS53-211ENST00000571805 FHL5Q5TD97 284 aa21.2■□□□□ 0.98
VPS53-211ENST00000571805 CNIH2Q6PI25 160 aa21.2■□□□□ 0.98
VPS53-211ENST00000571805 PARM1Q6UWI2 310 aa21.2■□□□□ 0.98
VPS53-211ENST00000571805 ENPP7Q6UWV6 458 aa21.2■□□□□ 0.98
VPS53-211ENST00000571805 WDR88Q6ZMY6 472 aa21.2■□□□□ 0.98
VPS53-211ENST00000571805 CXXC5Q7LFL8 322 aaKnown RBP21.2■□□□□ 0.98
VPS53-211ENST00000571805 BRIX1Q8TDN6 353 aaKnown RBP21.2■□□□□ 0.98
VPS53-211ENST00000571805 FGF14Q92915 247 aa21.2■□□□□ 0.98
VPS53-211ENST00000571805 SNX18Q96RF0 628 aa21.2■□□□□ 0.98
VPS53-211ENST00000571805 TWSG1Q9GZX9 223 aa21.2■□□□□ 0.98
VPS53-211ENST00000571805 H2AFY2Q9P0M6 372 aaPredicted RBP21.2■□□□□ 0.98
VPS53-211ENST00000571805 TNFRSF10DQ9UBN6 386 aa21.2■□□□□ 0.98
VPS53-211ENST00000571805 HOXC4P09017 264 aaPredicted RBP21.19■□□□□ 0.98
VPS53-211ENST00000571805 CPMP14384 443 aa21.19■□□□□ 0.98
VPS53-211ENST00000571805 GPR68Q15743 365 aa21.19■□□□□ 0.98
VPS53-211ENST00000571805 EXOSC6Q5RKV6 272 aaKnown RBP21.19■□□□□ 0.98
VPS53-211ENST00000571805 TMEM91Q6ZNR0 172 aa21.19■□□□□ 0.98
VPS53-211ENST00000571805 NEIL3Q8TAT5 605 aa21.19■□□□□ 0.98
VPS53-211ENST00000571805 SLC22A18Q96BI1 424 aa21.19■□□□□ 0.98
VPS53-211ENST00000571805 SENP5Q96HI0 755 aaPredicted RBP21.19■□□□□ 0.98
VPS53-211ENST00000571805 DEPDC7Q96QD5 511 aa21.19■□□□□ 0.98
VPS53-211ENST00000571805 ZNF350Q9GZX5 532 aa21.19■□□□□ 0.98
VPS53-211ENST00000571805 PIGUQ9H490 435 aa21.19■□□□□ 0.98
VPS53-211ENST00000571805 PCOLCE2Q9UKZ9 415 aa21.19■□□□□ 0.98
VPS53-211ENST00000571805 A8MV72 311 aaPredicted RBP21.19■□□□□ 0.98
VPS53-211ENST00000571805 TNFSF14O43557 240 aa21.19■□□□□ 0.98
VPS53-211ENST00000571805 IDH3BO43837 385 aa21.19■□□□□ 0.98
VPS53-211ENST00000571805 HLA-DQB1P01920 261 aa21.19■□□□□ 0.98
VPS53-211ENST00000571805 RPS4Y1P22090 263 aaKnown RBP21.19■□□□□ 0.98
VPS53-211ENST00000571805 HTR2AP28223 471 aa21.19■□□□□ 0.98
VPS53-211ENST00000571805 ATP6V1E1P36543 226 aa21.19■□□□□ 0.98
VPS53-211ENST00000571805 KIAA1024LP59773 190 aa21.19■□□□□ 0.98
VPS53-211ENST00000571805 TBRG1Q3YBR2 411 aa21.19■□□□□ 0.98
VPS53-211ENST00000571805 EIPR1Q53HC9 387 aa21.19■□□□□ 0.98
VPS53-211ENST00000571805 FCRL6Q6DN72 434 aa21.19■□□□□ 0.98
VPS53-211ENST00000571805 B3GLCTQ6Y288 498 aa21.19■□□□□ 0.98
VPS53-211ENST00000571805 PRR23CQ6ZRP0 262 aa21.19■□□□□ 0.98
VPS53-211ENST00000571805 UTS2BQ765I0 119 aa21.19■□□□□ 0.98
VPS53-211ENST00000571805 KLBQ86Z14 1044 aa21.19■□□□□ 0.98
VPS53-211ENST00000571805 ENKD1Q9H0I2 346 aa21.19■□□□□ 0.98
VPS53-211ENST00000571805 ISG20L2Q9H9L3 353 aaKnown RBP21.19■□□□□ 0.98
VPS53-211ENST00000571805 CACYBPQ9HB71 228 aaKnown RBP21.19■□□□□ 0.98
VPS53-211ENST00000571805 C19orf53Q9UNZ5 99 aaPredicted RBP21.19■□□□□ 0.98
VPS53-211ENST00000571805 POLHQ9Y253 713 aa21.19■□□□□ 0.98
VPS53-211ENST00000571805 SLC22A7Q9Y694 548 aa21.19■□□□□ 0.98
VPS53-211ENST00000571805 UNC119BA6NIH7 251 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 LYPD3O95274 346 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 FUT1P19526 365 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 EVX1P49640 407 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 RD3Q7Z3Z2 195 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 SHISA5Q8N114 240 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 OR51G2Q8NGK0 314 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 DOK4Q8TEW6 326 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 ZFPM2Q8WW38 1151 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 TIMP4Q99727 224 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 DPH1Q9BZG8 443 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 RNF32Q9H0A6 362 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 OR52D1Q9H346 318 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 IGFLR1Q9H665 355 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 KRCC1Q9NPI7 259 aaPredicted RBP21.18■□□□□ 0.98
VPS53-211ENST00000571805 KCNE5Q9UJ90 142 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 CA5BQ9Y2D0 317 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 A0A0B4J293 547 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 TRAPPC13A5PLN9 417 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 CD8B2A6NJW9 211 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 B3GALT2O43825 422 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 CSF2P04141 144 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 CD8BP10966 210 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 MAKP20794 623 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 COL9A1P20849 921 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 NTSR1P30989 418 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 KIR2DS3Q14952 304 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 P2RY14Q15391 338 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 PLBD1Q6P4A8 553 aa21.18■□□□□ 0.98
VPS53-211ENST00000571805 METAP1DQ6UB28 335 aaPredicted RBP21.18■□□□□ 0.98
VPS53-211ENST00000571805 RANBP3LQ86VV4 465 aaPredicted RBP21.18■□□□□ 0.98
VPS53-211ENST00000571805 RNF31Q96EP0 1072 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms