RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 TMED10P49755 219 aaKnown RBP8.48□□□□□ -1.05
VPS35-211ENST00000569950 ATP12AP54707 1039 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 EEFSECP57772 596 aaKnown RBP8.48□□□□□ -1.05
VPS35-211ENST00000569950 NCALDP61601 193 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 EEF1A1P68104 462 aaKnown RBP8.48□□□□□ -1.05
VPS35-211ENST00000569950 CDK6Q00534 326 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 LIPEQ05469 1076 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 DMTNQ08495 405 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 RBBP4Q09028 425 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 SNTA1Q13424 505 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 SCARB2Q14108 478 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 EFR3AQ14156 821 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 FGFBP1Q14512 234 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 HYAL4Q2M3T9 481 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 VMACQ2NL98 169 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 NDUFAF6Q330K2 333 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 PDZK1Q5T2W1 519 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 PRAMEF8Q5VWM4 474 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 PRAMEF7Q5VXH5 474 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 SLC22A10Q63ZE4 541 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 RPUSD3Q6P087 351 aaKnown RBP8.48□□□□□ -1.05
VPS35-211ENST00000569950 CBLN3Q6UW01 205 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 CCDC80Q76M96 950 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 CHERPQ8IWX8 916 aaKnown RBP8.48□□□□□ -1.05
VPS35-211ENST00000569950 DEFB107AQ8IZN7 70 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 ZNF619Q8N2I2 560 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 ZADH2Q8N4Q0 377 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 RNF148Q8N7C7 305 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 FADS6Q8N9I5 356 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 FAM156AQ8NDB6 213 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 OR2M7Q8NG81 312 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 GPR32P1Q8NGA4 272 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 TAMM41Q96BW9 452 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 REXO5Q96IC2 774 aaKnown RBP8.48□□□□□ -1.05
VPS35-211ENST00000569950 NPAS1Q99742 590 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 ARHGAP9Q9BRR9 750 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 THUMPD3Q9BV44 507 aaKnown RBP8.48□□□□□ -1.05
VPS35-211ENST00000569950 C1orf21Q9H246 121 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 RAD21L1Q9H4I0 556 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 UBQLN4Q9NRR5 601 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 SACM1LQ9NTJ5 587 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 EXD2Q9NVH0 621 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 CNIH4Q9P003 139 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 P2RX2Q9UBL9 471 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 ABCG2Q9UNQ0 655 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 CORO2BQ9UQ03 480 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 L3MBTL1Q9Y468 752 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 WDR45Q9Y484 360 aa8.48□□□□□ -1.05
VPS35-211ENST00000569950 GPC6Q9Y625 555 aaPredicted RBP8.48□□□□□ -1.05
VPS35-211ENST00000569950 C15orf38-AP3S2A0A0A6YYH1 394 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 A0A0G2JPF8 293 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 HNRNPCL2B2RXH8 293 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 HNRNPCL3B7ZW38 293 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 TP53I11O14683 189 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 SNPHO15079 494 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 SLC28A2O43868 658 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 PEX1O43933 1283 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 HNRNPCL1O60812 293 aaKnown RBP8.47□□□□□ -1.05
VPS35-211ENST00000569950 MFN2O95140 757 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 PRB1P04280 392 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 CELA3AP09093 270 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 HNRNPCL4P0DMR1 293 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 NR2F1P10589 423 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 CNR1P21554 472 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 MST1P26927 711 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 IL12BP29460 328 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 MSX2P35548 267 aaPredicted RBP8.47□□□□□ -1.05
VPS35-211ENST00000569950 PGM1P36871 562 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 ADH7P40394 386 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 RFC3P40938 356 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 MEOX1P50221 254 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 TDGF1P3P51864 188 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 FOXK1P85037 733 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 ZNF117Q03924 483 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 SKP2Q13309 424 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 ART3Q13508 389 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 GPR68Q15743 365 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 ZNF630Q2M218 657 aaPredicted RBP8.47□□□□□ -1.05
VPS35-211ENST00000569950 GLIPR1L2Q4G1C9 344 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 FLYWCH1Q4VC44 716 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 GPAT3Q53EU6 434 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 REEP3Q6NUK4 255 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 SLC30A6Q6NXT4 461 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 ZNF836Q6ZNA1 936 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 ASRGL1Q7L266 308 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 C16orf62Q7Z3J2 963 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 ARPINQ7Z6K5 226 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.47□□□□□ -1.05
VPS35-211ENST00000569950 TSPYL5Q86VY4 417 aaPredicted RBP8.47□□□□□ -1.05
VPS35-211ENST00000569950 VRK2Q86Y07 508 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 PTRH1Q86Y79 214 aaKnown RBP8.47□□□□□ -1.05
VPS35-211ENST00000569950 MICU2Q8IYU8 434 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 CLIP4Q8N3C7 705 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 METTL25Q8N6Q8 603 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 LSM14AQ8ND56 463 aaKnown RBP8.47□□□□□ -1.05
VPS35-211ENST00000569950 UTP4Q969X6 686 aaKnown RBP8.47□□□□□ -1.05
VPS35-211ENST00000569950 TMEM41AQ96HV5 264 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 CLPTM1LQ96KA5 538 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 CDRT15Q96T59 188 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 G6PC3Q9BUM1 346 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms