RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 AQP8O94778 261 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 KCNK2O95069 426 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 OXSR1O95747 527 aaPredicted RBP14.44□□□□□ -0.1
CLN3-229ENST00000567963 CHEK2O96017 543 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 NGFRP08138 427 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 FGF4P08620 206 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 ACP2P11117 423 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 TBXA2RP21731 343 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 KCNJ5P48544 419 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 RPL38P63173 70 aaKnown RBP14.44□□□□□ -0.1
CLN3-229ENST00000567963 CPEB4Q17RY0 729 aaKnown RBP eCLIP14.44□□□□□ -0.1
CLN3-229ENST00000567963 UGT3A2Q3SY77 523 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 FAM214BQ7L5A3 538 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 CXorf67Q86X51 503 aaPredicted RBP14.44□□□□□ -0.1
CLN3-229ENST00000567963 KRTAP1-3Q8IUG1 177 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 CLHC1Q8NHS4 586 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 HHATLQ9HCP6 504 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 FCGR2AP12318 317 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 ZNF17P17021 662 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 CRYGSP22914 178 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 CCKARP32238 428 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 NKX6-1P78426 367 aaPredicted RBP14.44□□□□□ -0.1
CLN3-229ENST00000567963 GALNTL6Q49A17 601 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 ZCCHC12Q6PEW1 402 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 FIGNL1Q6PIW4 674 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 SZRD1Q7Z422 152 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 ZAR1Q86SH2 424 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 HOMEZQ8IX15 550 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 OR6Y1Q8NGX8 325 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 FBXO30Q8TB52 745 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 MTERF3Q96E29 417 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 MS4A4EQ96PG1 132 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 PLSCR4Q9NRQ2 329 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 FBXO34Q9NWN3 711 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 PROCRQ9UNN8 238 aa14.44□□□□□ -0.1
CLN3-229ENST00000567963 A0A087WZY1 265 aa14.43□□□□□ -0.1
CLN3-229ENST00000567963 EIF1AYO14602 144 aaKnown RBP14.43□□□□□ -0.1
CLN3-229ENST00000567963 BCKDHAP12694 445 aa14.43□□□□□ -0.1
CLN3-229ENST00000567963 ASMTP46597 345 aa14.43□□□□□ -0.1
CLN3-229ENST00000567963 EIF1AXP47813 144 aaKnown RBP14.43□□□□□ -0.1
CLN3-229ENST00000567963 MLC1Q15049 377 aa14.43□□□□□ -0.1
CLN3-229ENST00000567963 DUSP5Q16690 384 aa14.43□□□□□ -0.1
CLN3-229ENST00000567963 EXOSC6Q5RKV6 272 aaKnown RBP14.43□□□□□ -0.1
CLN3-229ENST00000567963 SHEQ5VZ18 495 aa14.43□□□□□ -0.1
CLN3-229ENST00000567963 MFSD12Q6NUT3 480 aa14.43□□□□□ -0.1
CLN3-229ENST00000567963 C22orf34Q6ZV56 151 aa14.43□□□□□ -0.1
CLN3-229ENST00000567963 ZNF550Q7Z398 422 aa14.43□□□□□ -0.1
CLN3-229ENST00000567963 GTPBP8Q8N3Z3 284 aaPredicted RBP14.43□□□□□ -0.1
CLN3-229ENST00000567963 GATSQ8NAP1 163 aa14.43□□□□□ -0.1
CLN3-229ENST00000567963 ACTRT2Q8TDY3 377 aa14.43□□□□□ -0.1
CLN3-229ENST00000567963 PIK3IP1Q96FE7 263 aa14.43□□□□□ -0.1
CLN3-229ENST00000567963 C16orf58Q96GQ5 468 aa14.43□□□□□ -0.1
CLN3-229ENST00000567963 NPAS1Q99742 590 aa14.43□□□□□ -0.1
CLN3-229ENST00000567963 UBQLN4Q9NRR5 601 aa14.43□□□□□ -0.1
CLN3-229ENST00000567963 TRAF6Q9Y4K3 522 aa14.43□□□□□ -0.1
CLN3-229ENST00000567963 A0A1W2PRB8 838 aa14.42□□□□□ -0.1
CLN3-229ENST00000567963 ESPNB1AK53 854 aa14.42□□□□□ -0.1
CLN3-229ENST00000567963 TMEM233B4DJY2 109 aa14.42□□□□□ -0.1
CLN3-229ENST00000567963 ZNF500O60304 480 aaPredicted RBP14.42□□□□□ -0.1
CLN3-229ENST00000567963 CHRNGP07510 517 aa14.42□□□□□ -0.1
CLN3-229ENST00000567963 ALOX5P09917 674 aa14.42□□□□□ -0.1
CLN3-229ENST00000567963 EFNA1P20827 205 aaPredicted RBP14.42□□□□□ -0.1
CLN3-229ENST00000567963 PSMA4P25789 261 aaKnown RBP14.42□□□□□ -0.1
CLN3-229ENST00000567963 ALDH3A1P30838 453 aa14.42□□□□□ -0.1
CLN3-229ENST00000567963 LCN1P31025 176 aa14.42□□□□□ -0.1
CLN3-229ENST00000567963 SLC6A8P48029 635 aa14.42□□□□□ -0.1
CLN3-229ENST00000567963 SERPINB4P48594 390 aa14.42□□□□□ -0.1
CLN3-229ENST00000567963 RAC1P63000 192 aa14.42□□□□□ -0.1
CLN3-229ENST00000567963 CTU2Q2VPK5 515 aaKnown RBP14.42□□□□□ -0.1
CLN3-229ENST00000567963 ARL13AQ5H913 290 aaPredicted RBP14.42□□□□□ -0.1
CLN3-229ENST00000567963 CPTPQ5TA50 214 aa14.42□□□□□ -0.1
CLN3-229ENST00000567963 LRIG3Q6UXM1 1119 aa14.42□□□□□ -0.1
CLN3-229ENST00000567963 R3HCC1LQ7Z5L2 792 aaKnown RBP14.42□□□□□ -0.1
CLN3-229ENST00000567963 BIVMQ86UB2 503 aa14.42□□□□□ -0.1
CLN3-229ENST00000567963 WDR75Q8IWA0 830 aaKnown RBP14.42□□□□□ -0.1
CLN3-229ENST00000567963 DDIASQ8IXT1 998 aa14.42□□□□□ -0.1
CLN3-229ENST00000567963 BANPQ8N9N5 519 aa14.42□□□□□ -0.1
CLN3-229ENST00000567963 OR10D3Q8NH80 312 aa14.42□□□□□ -0.1
CLN3-229ENST00000567963 TWIST2Q8WVJ9 160 aa14.42□□□□□ -0.1
CLN3-229ENST00000567963 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.42□□□□□ -0.15e-8■■■■■ 65.3
CLN3-229ENST00000567963 PIGTQ969N2 578 aa14.42□□□□□ -0.1
CLN3-229ENST00000567963 ZBTB8AQ96BR9 441 aa14.42□□□□□ -0.1
CLN3-229ENST00000567963 FAM120BQ96EK7 910 aaKnown RBP14.42□□□□□ -0.1
CLN3-229ENST00000567963 GMPPAQ96IJ6 420 aaPredicted RBP14.42□□□□□ -0.1
CLN3-229ENST00000567963 ADGRG7Q96K78 797 aa14.42□□□□□ -0.1
CLN3-229ENST00000567963 C18orf12Q96KH6 178 aa14.42□□□□□ -0.1
CLN3-229ENST00000567963 MARK4Q96L34 752 aa14.42□□□□□ -0.1
CLN3-229ENST00000567963 PIP5K1AQ99755 562 aa14.42□□□□□ -0.1
CLN3-229ENST00000567963 PRRG4Q9BZD6 226 aa14.42□□□□□ -0.1
CLN3-229ENST00000567963 SIRT3Q9NTG7 399 aaPredicted RBP14.42□□□□□ -0.1
CLN3-229ENST00000567963 MED17Q9NVC6 651 aa14.42□□□□□ -0.1
CLN3-229ENST00000567963 MKS1Q9NXB0 559 aa14.42□□□□□ -0.1
CLN3-229ENST00000567963 PAQR5Q9NXK6 330 aaPredicted RBP14.42□□□□□ -0.1
CLN3-229ENST00000567963 TLDC2A0PJX2 215 aa14.41□□□□□ -0.1
CLN3-229ENST00000567963 C7orf72A4D263 438 aa14.41□□□□□ -0.1
CLN3-229ENST00000567963 PIP5K1BO14986 540 aa14.41□□□□□ -0.1
CLN3-229ENST00000567963 ADAMDEC1O15204 470 aa14.41□□□□□ -0.1
CLN3-229ENST00000567963 NPHS1O60500 1241 aa14.41□□□□□ -0.1
CLN3-229ENST00000567963 OPN1LWP04000 364 aa14.41□□□□□ -0.1
CLN3-229ENST00000567963 HPGDP15428 266 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms