RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 GALNT10Q86SR1 603 aa15.22■□□□□ 0.03
CLK3-210ENST00000563112 KRTCAP2Q8N6L1 136 aa15.22■□□□□ 0.03
CLK3-210ENST00000563112 OR4C3Q8NH37 302 aa15.22■□□□□ 0.03
CLK3-210ENST00000563112 ADAMTS15Q8TE58 950 aa15.22■□□□□ 0.03
CLK3-210ENST00000563112 MOAP1Q96BY2 351 aa15.22■□□□□ 0.03
CLK3-210ENST00000563112 STACQ99469 402 aa15.22■□□□□ 0.03
CLK3-210ENST00000563112 DUSP26Q9BV47 211 aa15.22■□□□□ 0.03
CLK3-210ENST00000563112 RBM24Q9BX46 236 aaKnown RBP15.22■□□□□ 0.03
CLK3-210ENST00000563112 BTBD2Q9BX70 525 aa15.22■□□□□ 0.03
CLK3-210ENST00000563112 POLDIP3Q9BY77 421 aaKnown RBP15.22■□□□□ 0.03
CLK3-210ENST00000563112 BHLHE41Q9C0J9 482 aaPredicted RBP15.22■□□□□ 0.03
CLK3-210ENST00000563112 UBQLN4Q9NRR5 601 aa15.22■□□□□ 0.03
CLK3-210ENST00000563112 DUSP22Q9NRW4 184 aa15.22■□□□□ 0.03
CLK3-210ENST00000563112 SIRT3Q9NTG7 399 aaPredicted RBP15.22■□□□□ 0.03
CLK3-210ENST00000563112 GIN1Q9NXP7 522 aa15.22■□□□□ 0.03
CLK3-210ENST00000563112 NOP53Q9NZM5 478 aaKnown RBP15.22■□□□□ 0.03
CLK3-210ENST00000563112 FAF1Q9UNN5 650 aaPredicted RBP15.22■□□□□ 0.03
CLK3-210ENST00000563112 RAP2CQ9Y3L5 183 aa15.22■□□□□ 0.03
CLK3-210ENST00000563112 ACTL7BQ9Y614 415 aa15.22■□□□□ 0.03
CLK3-210ENST00000563112 MED12LQ86YW9 2145 aa15.22■□□□□ 0.03
CLK3-210ENST00000563112 PCNX3Q9H6A9 2034 aa15.21■□□□□ 0.03
CLK3-210ENST00000563112 A0A087WZY1 265 aa15.21■□□□□ 0.03
CLK3-210ENST00000563112 ESPNB1AK53 854 aa15.21■□□□□ 0.03
CLK3-210ENST00000563112 H3BML4 177 aa15.21■□□□□ 0.03
CLK3-210ENST00000563112 SEC14L5O43304 696 aa15.21■□□□□ 0.03
CLK3-210ENST00000563112 ITM2AO43736 263 aa15.21■□□□□ 0.03
CLK3-210ENST00000563112 TNFRSF21O75509 655 aa15.21■□□□□ 0.03
CLK3-210ENST00000563112 CTAG2O75638 210 aa15.21■□□□□ 0.03
CLK3-210ENST00000563112 C6orf47O95873 294 aa15.21■□□□□ 0.03
CLK3-210ENST00000563112 CRHP06850 196 aa15.21■□□□□ 0.03
CLK3-210ENST00000563112 G6PDP11413 515 aa15.21■□□□□ 0.03
CLK3-210ENST00000563112 ATP6V1C1P21283 382 aa15.21■□□□□ 0.03
CLK3-210ENST00000563112 CLDN8P56748 225 aa15.21■□□□□ 0.03
CLK3-210ENST00000563112 PDCD2Q16342 344 aaPredicted RBP15.21■□□□□ 0.03
CLK3-210ENST00000563112 CDC73Q6P1J9 531 aa15.21■□□□□ 0.03
CLK3-210ENST00000563112 BHLHB9Q6PI77 547 aa15.21■□□□□ 0.03
CLK3-210ENST00000563112 PLXDC2Q6UX71 529 aa15.21■□□□□ 0.03
CLK3-210ENST00000563112 LUZP2Q86TE4 346 aa15.21■□□□□ 0.03
CLK3-210ENST00000563112 MISPQ8IVT2 679 aa15.21■□□□□ 0.03
CLK3-210ENST00000563112 GCNT2Q8N0V5 402 aa15.21■□□□□ 0.03
CLK3-210ENST00000563112 ZNF781Q8N8C0 355 aa15.21■□□□□ 0.03
CLK3-210ENST00000563112 OR5M1Q8NGP8 315 aa15.21■□□□□ 0.03
CLK3-210ENST00000563112 PSMA8Q8TAA3 256 aa15.21■□□□□ 0.03
CLK3-210ENST00000563112 OTUB1Q96FW1 271 aaPredicted RBP15.21■□□□□ 0.03
CLK3-210ENST00000563112 ACTRT3Q9BYD9 372 aa15.21■□□□□ 0.03
CLK3-210ENST00000563112 PIGUQ9H490 435 aa15.21■□□□□ 0.03
CLK3-210ENST00000563112 NEUROD4Q9HD90 331 aa15.21■□□□□ 0.03
CLK3-210ENST00000563112 ASIC5Q9NY37 505 aa15.21■□□□□ 0.03
CLK3-210ENST00000563112 EDARQ9UNE0 448 aa15.21■□□□□ 0.03
CLK3-210ENST00000563112 AP4B1Q9Y6B7 739 aa15.21■□□□□ 0.03
CLK3-210ENST00000563112 MPDZO75970 2070 aa15.21■□□□□ 0.03
CLK3-210ENST00000563112 NUP214P35658 2090 aaPredicted RBP15.21■□□□□ 0.03
CLK3-210ENST00000563112 TGM6O95932 706 aa15.2■□□□□ 0.02
CLK3-210ENST00000563112 SLC1A6P48664 564 aa15.2■□□□□ 0.02
CLK3-210ENST00000563112 RPL14P50914 215 aaKnown RBP15.2■□□□□ 0.02
CLK3-210ENST00000563112 ZNF41P51814 821 aaPredicted RBP15.2■□□□□ 0.02
CLK3-210ENST00000563112 SGCBQ16585 318 aa15.2■□□□□ 0.02
CLK3-210ENST00000563112 PGS1Q32NB8 556 aa15.2■□□□□ 0.02
CLK3-210ENST00000563112 EXOSC6Q5RKV6 272 aaKnown RBP15.2■□□□□ 0.02
CLK3-210ENST00000563112 CCNJQ5T5M9 372 aa15.2■□□□□ 0.02
CLK3-210ENST00000563112 RIMKLAQ8IXN7 391 aa15.2■□□□□ 0.02
CLK3-210ENST00000563112 GATSQ8NAP1 163 aa15.2■□□□□ 0.02
CLK3-210ENST00000563112 SFXN5Q8TD22 340 aa15.2■□□□□ 0.02
CLK3-210ENST00000563112 SMPDL3BQ92485 455 aa15.2■□□□□ 0.02
CLK3-210ENST00000563112 CDS1Q92903 461 aa15.2■□□□□ 0.02
CLK3-210ENST00000563112 PGM2Q96G03 612 aa15.2■□□□□ 0.02
CLK3-210ENST00000563112 PPP1R36Q96LQ0 422 aa15.2■□□□□ 0.02
CLK3-210ENST00000563112 PINK1Q9BXM7 581 aa15.2■□□□□ 0.02
CLK3-210ENST00000563112 HOXD1Q9GZZ0 328 aa15.2■□□□□ 0.02
CLK3-210ENST00000563112 CXorf36Q9H7Y0 433 aa15.2■□□□□ 0.02
CLK3-210ENST00000563112 ZNF395Q9H8N7 513 aaPredicted RBP15.2■□□□□ 0.02
CLK3-210ENST00000563112 PACSIN3Q9UKS6 424 aa15.2■□□□□ 0.02
CLK3-210ENST00000563112 VDAC3Q9Y277 283 aa15.2■□□□□ 0.02
CLK3-210ENST00000563112 CSMD2Q7Z408 3487 aa15.2■□□□□ 0.02
CLK3-210ENST00000563112 F8P00451 2351 aa15.19■□□□□ 0.02
CLK3-210ENST00000563112 AKAP6Q13023 2319 aa15.19■□□□□ 0.02
CLK3-210ENST00000563112 A0A1W2PQD3 144 aa15.19■□□□□ 0.02
CLK3-210ENST00000563112 A6NNC1 897 aa15.19■□□□□ 0.02
CLK3-210ENST00000563112 DHRS4L1P0CG22 281 aa15.19■□□□□ 0.02
CLK3-210ENST00000563112 EPXP11678 715 aa15.19■□□□□ 0.02
CLK3-210ENST00000563112 ZNF17P17021 662 aa15.19■□□□□ 0.02
CLK3-210ENST00000563112 BGNP21810 368 aa15.19■□□□□ 0.02
CLK3-210ENST00000563112 SUCLG1P53597 346 aaKnown RBP15.19■□□□□ 0.02
CLK3-210ENST00000563112 C21orf58P58505 322 aa15.19■□□□□ 0.02
CLK3-210ENST00000563112 STX3Q13277 289 aa15.19■□□□□ 0.02
CLK3-210ENST00000563112 DAZAP2Q15038 168 aaPredicted RBP15.19■□□□□ 0.02
CLK3-210ENST00000563112 HHATQ5VTY9 493 aa15.19■□□□□ 0.02
CLK3-210ENST00000563112 FBXW10Q5XX13 1052 aa15.19■□□□□ 0.02
CLK3-210ENST00000563112 ZAR1Q86SH2 424 aa15.19■□□□□ 0.02
CLK3-210ENST00000563112 CNEP1R1Q8N9A8 125 aa15.19■□□□□ 0.02
CLK3-210ENST00000563112 ZNF527Q8NB42 609 aa15.19■□□□□ 0.02
CLK3-210ENST00000563112 ACTRT2Q8TDY3 377 aa15.19■□□□□ 0.02
CLK3-210ENST00000563112 ZBTB8AQ96BR9 441 aa15.19■□□□□ 0.02
CLK3-210ENST00000563112 PAIP2Q9BPZ3 127 aaKnown RBP15.19■□□□□ 0.02
CLK3-210ENST00000563112 GPATCH1Q9BRR8 931 aaKnown RBP15.19■□□□□ 0.02
CLK3-210ENST00000563112 CLEC4MQ9H2X3 399 aaPredicted RBP15.19■□□□□ 0.02
CLK3-210ENST00000563112 AKTIPQ9H8T0 292 aa15.19■□□□□ 0.02
CLK3-210ENST00000563112 RASSF1Q9NS23 344 aa15.19■□□□□ 0.02
CLK3-210ENST00000563112 FBXO34Q9NWN3 711 aa15.19■□□□□ 0.02
CLK3-210ENST00000563112 PCDHGB4Q9UN71 923 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms