RNA–Protein interactions for RNA: ENST00000562609.2

GTF3C1-203, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 5

Gene GTF3C1, Length 2,824 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-203ENST00000562609 PKP4Q99569 1192 aa13.14□□□□□ -0.31
GTF3C1-203ENST00000562609 EQTNQ9NQ60 294 aa13.14□□□□□ -0.31
GTF3C1-203ENST00000562609 SEMA3GQ9NS98 782 aa13.14□□□□□ -0.31
GTF3C1-203ENST00000562609 ZSCAN32Q9NX65 697 aa13.14□□□□□ -0.31
GTF3C1-203ENST00000562609 DCAF16Q9NXF7 216 aa13.14□□□□□ -0.31
GTF3C1-203ENST00000562609 MGAT4CQ9UBM8 478 aa13.14□□□□□ -0.31
GTF3C1-203ENST00000562609 FLVCR2Q9UPI3 526 aa13.14□□□□□ -0.31
GTF3C1-203ENST00000562609 MTCL1Q9Y4B5 1905 aaKnown RBP13.14□□□□□ -0.31
GTF3C1-203ENST00000562609 PRR23D1E9PI22 279 aaPredicted RBP13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 MID1O15344 667 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 ARPC5O15511 151 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 HLA-DPB1P04440 258 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 ANKRD34CP0C6C1 535 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 PRR23D2P0DMB1 279 aaPredicted RBP13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 HSD3B1P14060 373 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 GABRA1P14867 456 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 RBMS1P29558 406 aaKnown RBP13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 RFX3P48380 749 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 MVDP53602 400 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 SIM1P81133 766 aaPredicted RBP13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 MAP4K2Q12851 820 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 HTR4Q13639 388 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 GK2Q14410 553 aaPredicted RBP13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 MELKQ14680 651 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 Q3ZCU0 254 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 FAM74A1Q5RGS3 127 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 COX20Q5RI15 118 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 HSD11B1LQ7Z5J1 315 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 OAFQ86UD1 273 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 NFKBIDQ8NI38 313 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 ASZ1Q8WWH4 475 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 GEMIN6Q8WXD5 167 aaKnown RBP13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 ACOT12Q8WYK0 555 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 WDR89Q96FK6 387 aaPredicted RBP13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 ARL5BQ96KC2 179 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 YIPF4Q9BSR8 244 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 ARL6Q9H0F7 186 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 FAM120CQ9NX05 1096 aaKnown RBP13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 PIPOXQ9P0Z9 390 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 NDOR1Q9UHB4 597 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 TMEM129A0AVI4 362 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 SOX30O94993 753 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 HPP00738 406 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 ADAP00813 363 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 CTSLP07711 333 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 SELLP14151 372 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 EN2P19622 333 aaPredicted RBP13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 RFC3P40938 356 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 NSG1P42857 185 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 CTSCP53634 463 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 RAG2P55895 527 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 ZXDCQ2QGD7 858 aaPredicted RBP13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 FAM109BQ6ICB4 259 aaPredicted RBP13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 SLC25A25Q6KCM7 469 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 SEZ6L2Q6UXD5 910 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 GDPD4Q6W3E5 623 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 RNF175Q8N4F7 328 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 BPIFCQ8NFQ6 507 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 PIGKQ92643 395 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 CMTM7Q96FZ5 175 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 SLC6A20Q9NP91 592 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 CA10Q9NS85 328 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 SPHK1Q9NYA1 384 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 GPN3Q9UHW5 284 aaPredicted RBP13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 IRAK3Q9Y616 596 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 ENPP4Q9Y6X5 453 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 ATG2BQ96BY7 2078 aa13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 GOLGA4Q13439 2230 aaKnown RBP13.13□□□□□ -0.31
GTF3C1-203ENST00000562609 TTLL8A6PVC2 850 aa13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 ST8SIA5O15466 376 aa13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 OR10H3O60404 316 aa13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 PEX14O75381 377 aa13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 S100A9P06702 114 aaKnown RBP13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 SPINT3P49223 89 aa13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 SSTP61278 116 aa13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 TNFRSF17Q02223 184 aa13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 XKR6Q5GH73 641 aa13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 OR5M10Q6IEU7 315 aa13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 TMUB2Q71RG4 321 aa13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 LHFPL3Q86UP9 236 aa13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 C12orf40Q86WS4 652 aa13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 CBLN2Q8IUK8 224 aa13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 RELL2Q8NC24 303 aaPredicted RBP13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 OR5M9Q8NGP3 310 aa13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 ZNF582Q96NG8 517 aaPredicted RBP13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 ZFP3Q96NJ6 502 aa13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 PTDSS2Q9BVG9 487 aa13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 C20orf85Q9H1P6 137 aa13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 RSPH9Q9H1X1 276 aaPredicted RBP13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 ARL15Q9NXU5 204 aa13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 NTMQ9P121 344 aa13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 AP1M2Q9Y6Q5 423 aa13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 USP34Q70CQ2 3546 aa13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 LINC01553A4QN01 128 aa13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 SLC28A2O43868 658 aa13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 OR12D1P0DN82 309 aa13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 AMD1P17707 334 aa13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 RPIAP49247 311 aa13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 TAP2Q03519 686 aa13.12□□□□□ -0.31
GTF3C1-203ENST00000562609 SCARB2Q14108 478 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms