RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 SLC13A4Q9UKG4 626 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 CNOT11Q9UKZ1 510 aaKnown RBP8.47□□□□□ -1.05
LDLR-210ENST00000559340 MKLN1Q9UL63 735 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 SLC35A3Q9Y2D2 325 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 CHCHD2Q9Y6H1 151 aaPredicted RBP8.47□□□□□ -1.05
LDLR-210ENST00000559340 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.47□□□□□ -1.05
LDLR-210ENST00000559340 ZNF407Q9C0G0 2248 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 MPDZO75970 2070 aa8.46□□□□□ -1.05
LDLR-210ENST00000559340 FAM47E-STBD1D6RA91 191 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 ACOT7O00154 380 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 NME4O00746 187 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 PEX1O43933 1283 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 KIAA0513O60268 411 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 EIF4E2O60573 245 aaKnown RBP8.46□□□□□ -1.06
LDLR-210ENST00000559340 DNAJC8O75937 253 aaPredicted RBP8.46□□□□□ -1.06
LDLR-210ENST00000559340 RASAL1O95294 804 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 OXSR1O95747 527 aaPredicted RBP8.46□□□□□ -1.06
LDLR-210ENST00000559340 F10P00742 488 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 IGKV1D-16P01601 117 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 CRYABP02511 175 aaKnown RBP8.46□□□□□ -1.06
LDLR-210ENST00000559340 THBS1P07996 1170 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 NUDT7P0C024 238 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 CCL3P10147 92 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 PLA2G2AP14555 144 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 ME2P23368 584 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 ELAVL4P26378 380 aaKnown RBP8.46□□□□□ -1.06
LDLR-210ENST00000559340 HTR1EP28566 365 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 CPOXP36551 454 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 ADH7P40394 386 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 GSK3BP49841 420 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 GZMMP51124 257 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 KCNJ2P63252 427 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 PLGLB1Q02325 96 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 BNIP2Q12982 314 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 ELOAQ14241 798 aaKnown RBP8.46□□□□□ -1.06
LDLR-210ENST00000559340 LIN52Q52LA3 116 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 EIPR1Q53HC9 387 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 FRRS1Q6ZNA5 592 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 CCDC80Q76M96 950 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 EIF3MQ7L2H7 374 aaKnown RBP8.46□□□□□ -1.06
LDLR-210ENST00000559340 GALNTL5Q7Z4T8 443 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 PTOV1Q86YD1 416 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 ZZZ3Q8IYH5 903 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 ZNF440Q8IYI8 595 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 ZNF614Q8N883 585 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 EXD3Q8N9H8 876 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 CATSPER1Q8NEC5 780 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 OR52P1PQ8NH57 321 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 PHOSPHO1Q8TCT1 267 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 WDR60Q8WVS4 1066 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 LZICQ8WZA0 190 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 MAL2Q969L2 176 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 MCUR1Q96AQ8 359 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 TMEM41AQ96HV5 264 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 ZNF597Q96LX8 424 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 RNF145Q96MT1 663 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 NODALQ96S42 347 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 SLC38A1Q9H2H9 487 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 PIF1Q9H611 641 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 PTGES2Q9H7Z7 377 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 KLHL1Q9NR64 748 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 KLHL28Q9NXS3 571 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 PPP4R1LQ9P1A2 415 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 SEC14L3Q9UDX4 400 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 PIEZO2Q9H5I5 2752 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 MGAQ8IWI9 3026 aa8.46□□□□□ -1.06
LDLR-210ENST00000559340 RP1L1Q8IWN7 2480 aaPredicted RBP8.45□□□□□ -1.06
LDLR-210ENST00000559340 PRAMEF27A3QJZ7 478 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 SERINC4A6NH21 518 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 AGAP5A6NIR3 686 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 NPIPB9F8W1W9 429 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 M0QX08 132 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 SCO2O43819 266 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 FCMRO60667 390 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 CBR3O75828 277 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 ANGPTL1O95841 491 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 C1QCP02747 245 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 CHRM4P08173 479 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 UQCRBP14927 111 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 GCKP35557 465 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 PGM1P36871 562 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 MEOX1P50221 254 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 KCNJ10P78508 379 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 FUT5Q11128 374 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 FGFBP1Q14512 234 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 ADRM1Q16186 407 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 KLHL26Q53HC5 615 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 ZNF311Q5JNZ3 666 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 MDGA2Q7Z553 956 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 SLC22A16Q86VW1 577 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 ZNF227Q86WZ6 799 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 PLCZ1Q86YW0 608 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 ARMC8Q8IUR7 673 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 SULF2Q8IWU5 870 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 ZNF843Q8N446 348 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 TOR1AIP2Q8NFQ8 470 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 OR2M7Q8NG81 312 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 OR4K17Q8NGC6 315 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 OR1J4Q8NGS1 313 aa8.45□□□□□ -1.06
LDLR-210ENST00000559340 OR4C3Q8NH37 302 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms