RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 CHMP6Q96FZ7 201 aa13.17□□□□□ -0.3
SHMT2-235ENST00000557740 PRRG4Q9BZD6 226 aa13.17□□□□□ -0.3
SHMT2-235ENST00000557740 BEX4Q9NWD9 120 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-235ENST00000557740 MKS1Q9NXB0 559 aa13.17□□□□□ -0.3
SHMT2-235ENST00000557740 ELOVL5Q9NYP7 299 aa13.17□□□□□ -0.3
SHMT2-235ENST00000557740 PROCRQ9UNN8 238 aa13.17□□□□□ -0.3
SHMT2-235ENST00000557740 EMC9Q9Y3B6 208 aa13.17□□□□□ -0.3
SHMT2-235ENST00000557740 MED12LQ86YW9 2145 aa13.16□□□□□ -0.3
SHMT2-235ENST00000557740 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.16□□□□□ -0.3
SHMT2-235ENST00000557740 TMEM114B3SHH9 223 aa13.16□□□□□ -0.3
SHMT2-235ENST00000557740 TMEM233B4DJY2 109 aa13.16□□□□□ -0.3
SHMT2-235ENST00000557740 PIP5K1BO14986 540 aa13.16□□□□□ -0.3
SHMT2-235ENST00000557740 CTIFO43310 598 aaKnown RBP13.16□□□□□ -0.3
SHMT2-235ENST00000557740 KCNK2O95069 426 aa13.16□□□□□ -0.3
SHMT2-235ENST00000557740 PLGP00747 810 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-235ENST00000557740 CHRNGP07510 517 aa13.16□□□□□ -0.3
SHMT2-235ENST00000557740 ALOX5P09917 674 aa13.16□□□□□ -0.3
SHMT2-235ENST00000557740 CD8BP10966 210 aa13.16□□□□□ -0.3
SHMT2-235ENST00000557740 BCKDHAP12694 445 aa13.16□□□□□ -0.3
SHMT2-235ENST00000557740 CD53P19397 219 aa13.16□□□□□ -0.3
SHMT2-235ENST00000557740 EFNA1P20827 205 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-235ENST00000557740 ME2P23368 584 aa13.16□□□□□ -0.3
SHMT2-235ENST00000557740 ALDH3A1P30838 453 aa13.16□□□□□ -0.3
SHMT2-235ENST00000557740 LCN1P31025 176 aa13.16□□□□□ -0.3
SHMT2-235ENST00000557740 UGT2B10P36537 528 aa13.16□□□□□ -0.3
SHMT2-235ENST00000557740 MAP3K8P41279 467 aa13.16□□□□□ -0.3
SHMT2-235ENST00000557740 FRKP42685 505 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-235ENST00000557740 EIF1AXP47813 144 aaKnown RBP13.16□□□□□ -0.3
SHMT2-235ENST00000557740 PRIM2P49643 509 aa13.16□□□□□ -0.3
SHMT2-235ENST00000557740 OCRLQ01968 901 aa13.16□□□□□ -0.3
SHMT2-235ENST00000557740 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.16□□□□□ -0.3
SHMT2-235ENST00000557740 FIGNL1Q6PIW4 674 aa13.16□□□□□ -0.3
SHMT2-235ENST00000557740 LRIG3Q6UXM1 1119 aa13.16□□□□□ -0.3
SHMT2-235ENST00000557740 RIBC1Q8N443 379 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-235ENST00000557740 SLC16A11Q8NCK7 471 aa13.16□□□□□ -0.3
SHMT2-235ENST00000557740 GIMAP5Q96F15 307 aa13.16□□□□□ -0.3
SHMT2-235ENST00000557740 WFIKKN1Q96NZ8 548 aa13.16□□□□□ -0.3
SHMT2-235ENST00000557740 C6orf203Q9P0P8 240 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-235ENST00000557740 NTMQ9P121 344 aa13.16□□□□□ -0.3
SHMT2-235ENST00000557740 TRAF6Q9Y4K3 522 aa13.16□□□□□ -0.3
SHMT2-235ENST00000557740 A0A1W2PPR1 153 aa13.15□□□□□ -0.3
SHMT2-235ENST00000557740 C16orf97H3BN30 126 aa13.15□□□□□ -0.3
SHMT2-235ENST00000557740 SCDO00767 359 aa13.15□□□□□ -0.3
SHMT2-235ENST00000557740 SCAMP2O15127 329 aaKnown RBP13.15□□□□□ -0.3
SHMT2-235ENST00000557740 NPHS1O60500 1241 aa13.15□□□□□ -0.3
SHMT2-235ENST00000557740 AQP8O94778 261 aa13.15□□□□□ -0.3
SHMT2-235ENST00000557740 FOSL1P15407 271 aa13.15□□□□□ -0.3
SHMT2-235ENST00000557740 TBXA2RP21731 343 aa13.15□□□□□ -0.3
SHMT2-235ENST00000557740 CCKARP32238 428 aa13.15□□□□□ -0.3
SHMT2-235ENST00000557740 RPL3P39023 403 aaKnown RBP13.15□□□□□ -0.3
SHMT2-235ENST00000557740 SERPINB4P48594 390 aa13.15□□□□□ -0.3
SHMT2-235ENST00000557740 POU6F2P78424 691 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-235ENST00000557740 IFFO1Q0D2I5 559 aa13.15□□□□□ -0.3
SHMT2-235ENST00000557740 DUSP5Q16690 384 aa13.15□□□□□ -0.3
SHMT2-235ENST00000557740 TMEM44Q2T9K0 475 aa13.15□□□□□ -0.3
SHMT2-235ENST00000557740 ARL13AQ5H913 290 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-235ENST00000557740 FAM214BQ7L5A3 538 aa13.15□□□□□ -0.3
SHMT2-235ENST00000557740 GGNQ86UU5 652 aa13.15□□□□□ -0.3
SHMT2-235ENST00000557740 MISPQ8IVT2 679 aa13.15□□□□□ -0.3
SHMT2-235ENST00000557740 WDR75Q8IWA0 830 aaKnown RBP13.15□□□□□ -0.3
SHMT2-235ENST00000557740 GTPBP8Q8N3Z3 284 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-235ENST00000557740 BANPQ8N9N5 519 aa13.15□□□□□ -0.3
SHMT2-235ENST00000557740 WFDC11Q8NEX6 87 aa13.15□□□□□ -0.3
SHMT2-235ENST00000557740 OR4C3Q8NH37 302 aa13.15□□□□□ -0.3
SHMT2-235ENST00000557740 OR2W6PQ8NHA6 318 aa13.15□□□□□ -0.3
SHMT2-235ENST00000557740 AGR3Q8TD06 166 aa13.15□□□□□ -0.3
SHMT2-235ENST00000557740 ZBTB8AQ96BR9 441 aa13.15□□□□□ -0.3
SHMT2-235ENST00000557740 PIK3IP1Q96FE7 263 aa13.15□□□□□ -0.3
SHMT2-235ENST00000557740 OTUB1Q96FW1 271 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-235ENST00000557740 SH3YL1Q96HL8 342 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-235ENST00000557740 PPP3R2Q96LZ3 170 aa13.15□□□□□ -0.3
SHMT2-235ENST00000557740 MECRQ9BV79 373 aa13.15□□□□□ -0.3
SHMT2-235ENST00000557740 DLL4Q9NR61 685 aa13.15□□□□□ -0.3
SHMT2-235ENST00000557740 UBQLN4Q9NRR5 601 aa13.15□□□□□ -0.3
SHMT2-235ENST00000557740 ZCCHC3Q9NUD5 404 aaKnown RBP13.15□□□□□ -0.3
SHMT2-235ENST00000557740 PAQR5Q9NXK6 330 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-235ENST00000557740 MCTS1Q9ULC4 181 aaKnown RBP13.15□□□□□ -0.3
SHMT2-235ENST00000557740 SNX8Q9Y5X2 465 aa13.15□□□□□ -0.3
SHMT2-235ENST00000557740 A0A1W2PRB8 838 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 DEFB108AA8MXU0 73 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 SYNGR4O95473 234 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 HSPA4LO95757 839 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 CGAP01215 116 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 FGF4P08620 206 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 ATP6V1C1P21283 382 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 CRYGSP22914 178 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 CTBP2P56545 445 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 GUSBP1Q15486 140 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 EXOC3L2Q2M3D2 409 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 SPDYE7PQ495Y7 208 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 ATP6AP1LQ52LC2 224 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 CCNJQ5T5M9 372 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 ZCCHC12Q6PEW1 402 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 ZCCHC23Q6ZST2 131 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 ZNF550Q7Z398 422 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 ZAR1Q86SH2 424 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 TRABD2AQ86V40 505 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 ZNF610Q8N9Z0 462 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 OR10D3Q8NH80 312 aa13.14□□□□□ -0.31
SHMT2-235ENST00000557740 FAM110BQ8TC76 370 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms