RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 VAMP5O95183 116 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 TBX6O95947 436 aaPredicted RBP4.78□□□□□ -1.64
TMEM260-210ENST00000556422 IFNA6P05013 189 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 GAAP10253 952 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 ZNF25P17030 456 aaPredicted RBP4.78□□□□□ -1.64
TMEM260-210ENST00000556422 S100A3P33764 101 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 GJA4P35212 333 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 ARSFP54793 590 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 ADARB1P78563 741 aaKnown RBP4.78□□□□□ -1.64
TMEM260-210ENST00000556422 CNTN1Q12860 1018 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 NPRL3Q12980 569 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 ZNF846Q147U1 533 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 TMEM52BQ4KMG9 183 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 ANKRD34AQ69YU3 496 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 BRICD5Q6PL45 260 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 TMEM179BQ7Z7N9 219 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 FOXRED2Q8IWF2 684 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 ADHFE1Q8IWW8 467 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 CLECL1Q8IZS7 167 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 HDDC3Q8N4P3 179 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 TP53I13Q8NBR0 393 aaPredicted RBP4.78□□□□□ -1.64
TMEM260-210ENST00000556422 BHLHE23Q8NDY6 225 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 OR4A15Q8NGL6 344 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 OR8J1Q8NGP2 316 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 OR10Q1Q8NGQ4 319 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 WDR34Q96EX3 536 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 SH3YL1Q96HL8 342 aaPredicted RBP4.78□□□□□ -1.64
TMEM260-210ENST00000556422 DUSP26Q9BV47 211 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 LGR4Q9BXB1 951 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 ZDHHC5Q9C0B5 715 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 CHST8Q9H2A9 424 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 OR52A5Q9H2C5 316 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 MTIF3Q9H2K0 278 aaKnown RBP4.78□□□□□ -1.64
TMEM260-210ENST00000556422 LTB4R2Q9NPC1 389 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 TMEM138Q9NPI0 162 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 COA4Q9NYJ1 87 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 MYEF2Q9P2K5 600 aaKnown RBP4.78□□□□□ -1.64
TMEM260-210ENST00000556422 PISDQ9UG56 409 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 SLC23A2Q9UGH3 650 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 MUC3AQ02505 3323 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 TEX13DA0A0J9YY54 714 aaPredicted RBP4.78□□□□□ -1.64
TMEM260-210ENST00000556422 C1orf226A1L170 272 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 EFCAB7A8K855 629 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 G3V2T6 193 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 SH3BGRLO75368 114 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 CREG1O75629 220 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 NXPH2O95156 264 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 LAMP1P11279 417 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 ZNF23P17027 643 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 NT5EP21589 574 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 HNRNPA2B1P22626 353 aaKnown RBP4.78□□□□□ -1.64
TMEM260-210ENST00000556422 FSHRP23945 695 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 FPR3P25089 353 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 PPP2R1BP30154 601 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 ACTR1BP42025 376 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 MAGEA2P43356 314 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 KIR3DL1P43629 444 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 GPR1P46091 355 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 CDKN1BP46527 198 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 FHITP49789 147 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 BMXP51813 675 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 CDH15P55291 814 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 BDH1Q02338 343 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 CEBPEQ15744 281 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 SMAD2Q15796 467 aaKnown RBP4.78□□□□□ -1.64
TMEM260-210ENST00000556422 TMPRSS11BQ86T26 416 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 PTOV1Q86YD1 416 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 TSPAN14Q8NG11 270 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 OR13C3Q8NGS6 347 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 ATOH1Q92858 354 aaPredicted RBP4.78□□□□□ -1.64
TMEM260-210ENST00000556422 ITCHQ96J02 903 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 NEU1Q99519 415 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 SLC6A16Q9GZN6 736 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 DPEP2Q9H4A9 486 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 SGK2Q9HBY8 427 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 TM7SF3Q9NS93 570 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 THAP10Q9P2Z0 257 aaPredicted RBP4.78□□□□□ -1.64
TMEM260-210ENST00000556422 SERGEFQ9UGK8 458 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 B3GNT3Q9Y2A9 372 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 GRIP1Q9Y3R0 1128 aa4.78□□□□□ -1.64
TMEM260-210ENST00000556422 A0A1W2PPQ1 181 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 RFPL4AA6NLU0 287 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 GABRR3A8MPY1 467 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 RFPL4AL1F8VTS6 287 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 RFXANKO14593 260 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 ARPC5O15511 151 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 BCL10O95999 233 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 FBP1P09467 338 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 H2AFB2P0C5Z0 115 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 PEPDP12955 493 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 GPX2P18283 190 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 EFNA1P20827 205 aaPredicted RBP4.77□□□□□ -1.65
TMEM260-210ENST00000556422 CTSSP25774 331 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 SHMT2P34897 504 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 TGFBR2P37173 567 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 RPS13P62277 151 aaKnown RBP4.77□□□□□ -1.65
TMEM260-210ENST00000556422 ABHD18Q0P651 414 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 PPP1R8Q12972 351 aaKnown RBP4.77□□□□□ -1.65
TMEM260-210ENST00000556422 BNIP3Q12983 259 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 GAB1Q13480 694 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms