RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 PPP1R3DO95685 299 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 IFNGP01579 166 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 HMGN1P05114 100 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 CISD3P0C7P0 127 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 CPMP14384 443 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 ETV5P41161 510 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 ETV1P50549 477 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 COMMD2Q86X83 199 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 PRR22Q8IZ63 422 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 SIMC1Q8NDZ2 872 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 OR52E2Q8NGJ4 325 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 SETD6Q8TBK2 473 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 ACTRT3Q9BYD9 372 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 PLA2G12AQ9BZM1 189 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 MUTYHQ9UIF7 546 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 FBXL21Q9UKT6 434 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 NAALAD2Q9Y3Q0 740 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 HEBP2Q9Y5Z4 205 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 SH3D21A4FU49 640 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 PCP4L1A6NKN8 68 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 A8MVJ9 347 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 CLDN4O14493 209 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 STX11O75558 287 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 TSPAN9O75954 239 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 SOX18P35713 384 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 SFTPA2Q8IWL1 248 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 ZNF559Q9BR84 538 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 GABARAPL1Q9H0R8 117 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 SEMA4GQ9NTN9 838 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 UNC13CQ8NB66 2214 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 LILRB3O75022 631 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 TOXO94900 526 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 SEMA3DO95025 777 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 TMEM35AQ53FP2 167 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 C11orf88Q6PI97 169 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 YIPF7Q8N8F6 280 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 BBS1Q8NFJ9 593 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 ZNF707Q96C28 371 aaPredicted RBP13.9□□□□□ -0.18
CUX1-215ENST00000556210 PLA2G2FQ9BZM2 168 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 SLA2Q9H6Q3 261 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 MRPL39Q9NYK5 338 aaKnown RBP13.9□□□□□ -0.18
CUX1-215ENST00000556210 DOCK4Q8N1I0 1966 aa13.9□□□□□ -0.18
CUX1-215ENST00000556210 LOC105369274A0A096LPK9 316 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 LOC102723532A0A0G2JNH3 316 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 C11orf98E9PRG8 122 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 PEX12O00623 359 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 NPC1O15118 1278 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 GCM2O75603 506 aaPredicted RBP13.89□□□□□ -0.19
CUX1-215ENST00000556210 IGHA2P01877 340 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 BCL2A1Q16548 175 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 PUS10Q3MIT2 529 aaKnown RBP13.89□□□□□ -0.19
CUX1-215ENST00000556210 CCDC58Q4VC31 144 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 TMEM64Q6YI46 380 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 OR4N4Q8N0Y3 316 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 NATD1Q8N6N6 113 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 OR4D11Q8NGI4 311 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 CHD5Q8TDI0 1954 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 MS4A6EQ96DS6 147 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 METTL2AQ96IZ6 378 aaKnown RBP13.89□□□□□ -0.19
CUX1-215ENST00000556210 TGM7Q96PF1 710 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 CD93Q9NPY3 652 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 PHF11Q9UIL8 331 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 A0A0G2JPF8 293 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 TRIM64BA6NI03 449 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 HNRNPCL3B7ZW38 293 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 EEF1E1O43324 174 aaKnown RBP13.89□□□□□ -0.19
CUX1-215ENST00000556210 HNRNPCL4P0DMR1 293 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 TRIM23P36406 574 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 POU6F2P78424 691 aaPredicted RBP13.89□□□□□ -0.19
CUX1-215ENST00000556210 NDUFA9Q16795 377 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 TP53I3Q53FA7 332 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 ANKRD54Q6NXT1 300 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 SYT9Q86SS6 491 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 ACBD7Q8N6N7 88 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 SDR9C7Q8NEX9 313 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 OR13C2Q8NGS9 318 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 LMX1AQ8TE12 382 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 PRRC1Q96M27 445 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 PCDHGB2Q9Y5G2 931 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 LRRC37A2A6NM11 1700 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 FFAR1O14842 300 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 UQCRC1P31930 480 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 PSMB10P40306 273 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 ENPP2Q13822 863 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 FXNQ16595 210 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 TATDN3Q17R31 274 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 CNIH2Q6PI25 160 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 OR5H6Q8NGV6 325 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 MYADMQ96S97 322 aa13.89□□□□□ -0.19
CUX1-215ENST00000556210 C11orf54Q9H0W9 315 aaPredicted RBP13.89□□□□□ -0.19
CUX1-215ENST00000556210 THAP10Q9P2Z0 257 aaPredicted RBP13.89□□□□□ -0.19
CUX1-215ENST00000556210 APOBEC3BQ9UH17 382 aaKnown RBP13.89□□□□□ -0.19
CUX1-215ENST00000556210 GPR55Q9Y2T6 319 aaPredicted RBP13.89□□□□□ -0.19
CUX1-215ENST00000556210 HCCSP53701 268 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 ARHGAP19Q14CB8 494 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 SMAD2Q15796 467 aaKnown RBP13.88□□□□□ -0.19
CUX1-215ENST00000556210 SYT14P1Q58G82 188 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 OR6F1Q8NGZ6 308 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 ELP4Q96EB1 424 aa13.88□□□□□ -0.19
CUX1-215ENST00000556210 ZNF582Q96NG8 517 aaPredicted RBP13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms