RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 UHRF2Q96PU4 802 aa5.63□□□□□ -1.51
VPS29-210ENST00000552130 MAP3K3Q99759 626 aa5.63□□□□□ -1.51
VPS29-210ENST00000552130 SLC38A1Q9H2H9 487 aa5.63□□□□□ -1.51
VPS29-210ENST00000552130 ZNF665Q9H7R5 613 aa5.63□□□□□ -1.51
VPS29-210ENST00000552130 MRPL40Q9NQ50 206 aaKnown RBP5.63□□□□□ -1.51
VPS29-210ENST00000552130 RNF146Q9NTX7 359 aa5.63□□□□□ -1.51
VPS29-210ENST00000552130 ELOVL2Q9NXB9 296 aa5.63□□□□□ -1.51
VPS29-210ENST00000552130 MRM2Q9UI43 246 aaKnown RBP5.63□□□□□ -1.51
VPS29-210ENST00000552130 PACSIN3Q9UKS6 424 aa5.63□□□□□ -1.51
VPS29-210ENST00000552130 FZR1Q9UM11 496 aa5.63□□□□□ -1.51
VPS29-210ENST00000552130 SAMHD1Q9Y3Z3 626 aaKnown RBP5.63□□□□□ -1.51
VPS29-210ENST00000552130 LRRC42Q9Y546 428 aa5.63□□□□□ -1.51
VPS29-210ENST00000552130 AFF2P51816 1311 aa5.63□□□□□ -1.51
VPS29-210ENST00000552130 KCNE1BA0A087WTH5 132 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 MED19A0JLT2 244 aaPredicted RBP5.62□□□□□ -1.51
VPS29-210ENST00000552130 GRID2IPA4D2P6 1211 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 LRP5LA4QPB2 252 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 KLRC4-KLRK1H3BQV0 150 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 SMLR1H3BR10 107 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 RHODO00212 210 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 TOX3O15405 576 aaPredicted RBP5.62□□□□□ -1.51
VPS29-210ENST00000552130 GMDSO60547 372 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 VAPBO95292 243 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 PAPSS2O95340 614 aaPredicted RBP5.62□□□□□ -1.51
VPS29-210ENST00000552130 NDUFB7P17568 137 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 MAGP20916 626 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 SYT1P21579 422 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 HMGCLP35914 325 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 MAGEA5P43359 124 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 RFX3P48380 749 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 UCNP55089 124 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 HNRNPH2P55795 449 aaKnown RBP5.62□□□□□ -1.51
VPS29-210ENST00000552130 CLDN17P56750 224 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 RWDD2BP57060 319 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 RAB10P61026 200 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 MRPS6P82932 125 aaKnown RBP5.62□□□□□ -1.51
VPS29-210ENST00000552130 GLO1Q04760 184 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 CHRNB3Q05901 458 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 GPR50Q13585 617 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 ZNF699Q32M78 642 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 VPS26BQ4G0F5 336 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 MANEAQ5SRI9 462 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 CELF3Q5SZQ8 465 aaKnown RBP5.62□□□□□ -1.51
VPS29-210ENST00000552130 GPR107Q5VW38 600 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 DLK2Q6UY11 383 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 TMEM64Q6YI46 380 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 Q7L0L9 218 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 TRIM69Q86WT6 500 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 ERI1Q8IV48 349 aaKnown RBP5.62□□□□□ -1.51
VPS29-210ENST00000552130 ITPRIPQ8IWB1 547 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 MAP7D3Q8IWC1 876 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 CCDC197Q8NCU1 140 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 OR2AK2Q8NG84 335 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 OR4A4PQ8NGN8 299 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 NUBPLQ8TB37 319 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 FCAMRQ8WWV6 532 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 SORCS1Q8WY21 1168 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 UPRTQ96BW1 309 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 OTUB2Q96DC9 234 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 DUS3LQ96G46 650 aaKnown RBP5.62□□□□□ -1.51
VPS29-210ENST00000552130 B3GALT6Q96L58 329 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 CSPG4P5Q96PW8 444 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 MBOAT4Q96T53 435 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 FMO2Q99518 471 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 TM2D2Q9BX73 214 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 GPR174Q9BXC1 333 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 PANK2Q9BZ23 570 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 VN1R1Q9GZP7 353 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 SRRQ9GZT4 340 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 EGLN3Q9H6Z9 239 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 SLC40A1Q9NP59 571 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 MLXIPLQ9NP71 852 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 PNRC2Q9NPJ4 139 aaKnown RBP5.62□□□□□ -1.51
VPS29-210ENST00000552130 SERTAD4Q9NUC0 356 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 IMP3Q9NV31 184 aaKnown RBP5.62□□□□□ -1.51
VPS29-210ENST00000552130 SYBUQ9NX95 663 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 STMN3Q9NZ72 180 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 LNPEPQ9UIQ6 1025 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 TIMM22Q9Y584 194 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 USP16Q9Y5T5 823 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 PEX16Q9Y5Y5 336 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 MAP3K15Q6ZN16 1313 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 LRPPRCP42704 1394 aaKnown RBP5.62□□□□□ -1.51
VPS29-210ENST00000552130 PRAG1Q86YV5 1406 aa5.62□□□□□ -1.51
VPS29-210ENST00000552130 A0A1W2PNV4 684 aa5.61□□□□□ -1.51
VPS29-210ENST00000552130 PRSS37A4D1T9 235 aa5.61□□□□□ -1.51
VPS29-210ENST00000552130 CLEC18AA5D8T8 446 aa5.61□□□□□ -1.51
VPS29-210ENST00000552130 ZNF732B4DXR9 585 aa5.61□□□□□ -1.51
VPS29-210ENST00000552130 H3BMH7 237 aa5.61□□□□□ -1.51
VPS29-210ENST00000552130 MKRN2OSH3BPM6 223 aa5.61□□□□□ -1.51
VPS29-210ENST00000552130 LIN7AO14910 233 aaPredicted RBP5.61□□□□□ -1.51
VPS29-210ENST00000552130 AIREO43918 545 aa5.61□□□□□ -1.51
VPS29-210ENST00000552130 ATP10AO60312 1499 aa5.61□□□□□ -1.51
VPS29-210ENST00000552130 SRPX2O60687 465 aaPredicted RBP5.61□□□□□ -1.51
VPS29-210ENST00000552130 FAM20BO75063 409 aa5.61□□□□□ -1.51
VPS29-210ENST00000552130 CNOT3O75175 753 aaKnown RBP5.61□□□□□ -1.51
VPS29-210ENST00000552130 B3GAT3O94766 335 aa5.61□□□□□ -1.51
VPS29-210ENST00000552130 FADS2O95864 444 aaKnown RBP5.61□□□□□ -1.51
VPS29-210ENST00000552130 NUDT3O95989 172 aa5.61□□□□□ -1.51
VPS29-210ENST00000552130 SLC35G4P0C7Q5 338 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms