RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 TESQ9UGI8 421 aaKnown RBP4.93□□□□□ -1.62
USP28-213ENST00000544967 MGAT4BQ9UQ53 548 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 HS3ST2Q9Y278 367 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 PCDHGA1Q9Y5H4 931 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 C5orf42Q9H799 3197 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 BRWD1Q9NSI6 2320 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 A0A1B0GTL3 188 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 A0A1B0GUH1 482 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 A0A1B0GWJ7 208 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 C2orf72A6NCS6 295 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 ISM1B1AKI9 464 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 H7BY64 318 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 SULT1C2O00338 296 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 UBE2CO00762 179 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 SSX5O60225 188 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 CLN5O75503 358 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 ZNF682O95780 498 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 PEX11BO96011 259 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 SOD1P00441 154 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 IL5P05113 134 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 HBQ1P09105 142 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 ATXN1LP0C7T5 689 aaKnown RBP4.93□□□□□ -1.62
USP28-213ENST00000544967 RHOQP17081 205 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 GJA1P17302 382 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 PRPS1L1P21108 318 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 TACR2P21452 398 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 APEX1P27695 318 aaKnown RBP4.93□□□□□ -1.62
USP28-213ENST00000544967 MTNR1BP49286 362 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 PGGT1BP53609 377 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 PITPNAQ00169 270 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 GTF2H2Q13888 395 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 COTL1Q14019 142 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 TRAM1Q15629 374 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 C10orf120Q5SQS8 335 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 C10orf91Q5T1B1 145 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 ASTLQ6HA08 431 aaPredicted RBP4.93□□□□□ -1.62
USP28-213ENST00000544967 DHRS7BQ6IAN0 325 aaPredicted RBP4.93□□□□□ -1.62
USP28-213ENST00000544967 FRMPD2BQ6IN97 320 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 GTF2H2CQ6P1K8 395 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 BHLHB9Q6PI77 547 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 ZC3H14Q6PJT7 736 aaKnown RBP4.93□□□□□ -1.62
USP28-213ENST00000544967 GOLGA7Q7Z5G4 137 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 TP53INP2Q8IXH6 220 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 SLC5A8Q8N695 610 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 OR9A1PQ8NGU1 263 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 OR52N1Q8NH53 320 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 SPATA22Q8NHS9 363 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 GANCQ8TET4 914 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 ING5Q8WYH8 240 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 NDRG1Q92597 394 aaKnown RBP4.93□□□□□ -1.62
USP28-213ENST00000544967 RIT1Q92963 219 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 UBE2FQ969M7 185 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 PHF21AQ96BD5 680 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 CXorf40BQ96DE9 158 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 CMTM7Q96FZ5 175 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 CAMK1GQ96NX5 476 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 TXN2Q99757 166 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 PDCD10Q9BUL8 212 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 PLEKHA1Q9HB21 404 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 NANSQ9NR45 359 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 NDUFAF4Q9P032 175 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 OR12D3Q9UGF7 316 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 LSM7Q9UK45 103 aaKnown RBP4.93□□□□□ -1.62
USP28-213ENST00000544967 CLCA3PQ9Y6N3 262 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 TEX13CA0A0J9YWL9 993 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 RAB19A4D1S5 217 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 PCP4L1A6NKN8 68 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 SNRPGP15A8MWD9 76 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 K7ESF4 209 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 EIF1AYO14602 144 aaKnown RBP4.93□□□□□ -1.62
USP28-213ENST00000544967 PDCD5O14737 125 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 FPGTO14772 594 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 CASKO14936 926 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 CHST10O43529 356 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 CLDN11O75508 207 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 MT-CYBP00156 380 aaPredicted RBP4.93□□□□□ -1.62
USP28-213ENST00000544967 HPP00738 406 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 HLA-DPB1P04440 258 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 NR2F6P10588 404 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 OSMP13725 252 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 NPR2P20594 1047 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 PRDX3P30048 256 aaKnown RBP4.93□□□□□ -1.62
USP28-213ENST00000544967 MC4RP32245 332 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 SLC11A2P49281 568 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 SGSHP51688 502 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 CRISP3P54108 245 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 RAB40BQ12829 278 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 LRRC32Q14392 662 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 PUM1Q14671 1186 aaKnown RBP eCLIP4.93□□□□□ -1.62
USP28-213ENST00000544967 PTGES3Q15185 160 aaKnown RBP4.93□□□□□ -1.62
USP28-213ENST00000544967 SEC23BQ15437 767 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 ADIPOQQ15848 244 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 HES5Q5TA89 166 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 ZNF770Q6IQ21 691 aaPredicted RBP4.93□□□□□ -1.62
USP28-213ENST00000544967 LINGO4Q6UY18 593 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 RASSF6Q6ZTQ3 369 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 PTCHD4Q6ZW05 846 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 OAFQ86UD1 273 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 PIM3Q86V86 326 aa4.93□□□□□ -1.62
USP28-213ENST00000544967 PDZD9Q8IXQ8 264 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms