RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 MED20Q9H944 212 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 POLE3Q9NRF9 147 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 KLHL9Q9P2J3 617 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 DIMT1Q9UNQ2 313 aaKnown RBP13.4□□□□□ -0.26
LIMS1-215ENST00000544547 H7BY64 318 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 STC2O76061 302 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 GDNFP39905 211 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 TBPL1P62380 186 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 RING1Q06587 406 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 IRF3Q14653 427 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 ZNF79Q15937 498 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 CD276Q5ZPR3 534 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 ADAMTS14Q8WXS8 1223 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 PRAP1Q96NZ9 151 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 F5H5P2 479 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 RNASET2O00584 256 aaKnown RBP13.4□□□□□ -0.26
LIMS1-215ENST00000544547 XKRYO14609 159 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 NDUFV2P19404 249 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 INSL4Q14641 139 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 Q5BKY6 102 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 IFNL1Q8IU54 200 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 REM2Q8IYK8 340 aaPredicted RBP13.4□□□□□ -0.26
LIMS1-215ENST00000544547 GPR26Q8NDV2 337 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 OR8J2Q8NGG1 315 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 GAL3ST4Q96RP7 486 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 DPYSL5Q9BPU6 564 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 SMG9Q9H0W8 520 aaKnown RBP13.4□□□□□ -0.26
LIMS1-215ENST00000544547 GABRQQ9UN88 632 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 V9GYH0 126 aa13.4□□□□□ -0.26
LIMS1-215ENST00000544547 LOC105371267A0A1B0GV96 52 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 RAB19A4D1S5 217 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 SC5DO75845 299 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 OAZ2O95190 189 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 PRH1P02810 166 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 PSMB1P20618 241 aaKnown RBP13.39□□□□□ -0.27
LIMS1-215ENST00000544547 AQP2P41181 271 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 GRM7Q14831 915 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 SYT9Q86SS6 491 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 GTPBP8Q8N3Z3 284 aaPredicted RBP13.39□□□□□ -0.27
LIMS1-215ENST00000544547 HORMAD2Q8N7B1 307 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 FANK1Q8TC84 345 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 OR5P2Q8WZ92 322 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 MS4A4AQ96JQ5 239 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 COL4A5P29400 1685 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 EEF1E1-BLOC1S5C9J1V9 151 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 PLA2G10O15496 165 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 ERI3O43414 337 aaKnown RBP13.39□□□□□ -0.27
LIMS1-215ENST00000544547 HRO43593 1189 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 SOX30O94993 753 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 TPOP07202 933 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 ACP5P13686 325 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 RBM34P42696 430 aaKnown RBP13.39□□□□□ -0.27
LIMS1-215ENST00000544547 STXBP1P61764 594 aaKnown RBP13.39□□□□□ -0.27
LIMS1-215ENST00000544547 SYT14P1Q58G82 188 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 ARSIQ5FYB1 569 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 ACSM5Q6NUN0 579 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 ZNF783Q6ZMS7 281 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 C12orf45Q8N5I9 185 aaPredicted RBP13.39□□□□□ -0.27
LIMS1-215ENST00000544547 NEIL2Q969S2 332 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 PDLIM5Q96HC4 596 aaKnown RBP13.39□□□□□ -0.27
LIMS1-215ENST00000544547 SLX1AQ9BQ83 275 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 LGR4Q9BXB1 951 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 BABAM2Q9NXR7 383 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 WASH4PA8MWX3 477 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 SMAD6O43541 496 aaKnown RBP13.39□□□□□ -0.27
LIMS1-215ENST00000544547 SSX5O60225 188 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 RCBTB2O95199 551 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 TSPAN12O95859 305 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 RD3LP0DJH9 198 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 C1GALT1C1LP0DN25 315 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 EPCAMP16422 314 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 IL1RNP18510 177 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 BTG1P62324 171 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 GDPD4Q6W3E5 623 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 C7orf61Q8IZ16 206 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 WDR20Q8TBZ3 569 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 SRMSQ9H3Y6 488 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 NLGN3Q9NZ94 848 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 PRSS44E7EML9 344 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 TNFRSF10BO14763 440 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 HBQ1P09105 142 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 RORAP35398 523 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 FXYD6P3P58550 94 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 TAS2R43P59537 309 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 PON3Q15166 354 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 PCGF3Q3KNV8 242 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 PIP5KL1Q5T9C9 394 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 APCDD1Q8J025 514 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 METTL21AQ8WXB1 218 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 TRIB3Q96RU7 358 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 TMEM184CQ9NVA4 438 aa13.39□□□□□ -0.27
LIMS1-215ENST00000544547 TRABD2BA6NFA1 517 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 ZAR1LA6NP61 321 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 PRAMEF2O60811 474 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 NPR2P20594 1047 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 S100A11P31949 105 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 BMP8BP34820 402 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 CRYBB2P43320 205 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 DGCR2P98153 550 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 SFXN4Q6P4A7 337 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms