RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 AK4P27144 223 aaPredicted RBP8.29□□□□□ -1.08
YBX3-208ENST00000540447 EMP3P54852 163 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 TAS2R30P59541 319 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 SIX1Q15475 284 aaPredicted RBP8.29□□□□□ -1.08
YBX3-208ENST00000540447 TAF9Q16594 264 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 TECPR1Q7Z6L1 1165 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 KDF1Q8NAX2 398 aaPredicted RBP8.29□□□□□ -1.08
YBX3-208ENST00000540447 OR5AK2Q8NH90 309 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 RNF128Q8TEB7 428 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 APH1BQ8WW43 257 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 PGAP3Q96FM1 320 aaPredicted RBP8.29□□□□□ -1.08
YBX3-208ENST00000540447 NPAS1Q99742 590 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 FAM103A1Q9BTL3 118 aaKnown RBP8.29□□□□□ -1.08
YBX3-208ENST00000540447 SLC25A18Q9H1K4 315 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 RRAGCQ9HB90 399 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 TAF9BQ9HBM6 251 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 A0A1B0GTW7 788 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 C17orf102A2RUQ5 167 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 MEIS2O14770 477 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 MAFO75444 373 aaPredicted RBP8.29□□□□□ -1.08
YBX3-208ENST00000540447 C1GALT1C1LP0DN25 315 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 HAPLN1P10915 354 aaPredicted RBP8.29□□□□□ -1.08
YBX3-208ENST00000540447 RHOQP17081 205 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 CSNK2A2P19784 350 aaPredicted RBP8.29□□□□□ -1.08
YBX3-208ENST00000540447 RAB5AP20339 215 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 NFYBP25208 207 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 CYS1Q717R9 158 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 CILP2Q8IUL8 1156 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 NPAS4Q8IUM7 802 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 OR4K17Q8NGC6 315 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 OR4K1Q8NGD4 311 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 RBMXL1Q96E39 390 aaKnown RBP8.29□□□□□ -1.08
YBX3-208ENST00000540447 GPR78Q96P69 363 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 ELF4Q99607 663 aaPredicted RBP8.29□□□□□ -1.08
YBX3-208ENST00000540447 APOBEC3GQ9HC16 384 aaKnown RBP8.29□□□□□ -1.08
YBX3-208ENST00000540447 SDR39U1Q9NRG7 319 aaPredicted RBP8.29□□□□□ -1.08
YBX3-208ENST00000540447 H0Y8G0 127 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 H3BRB1 525 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 SLC10A3P09131 477 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 INSRRP14616 1297 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 PFKLP17858 780 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 GPX3P22352 226 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 AKR1C3P42330 323 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 RPS25P62851 125 aaKnown RBP8.29□□□□□ -1.08
YBX3-208ENST00000540447 SLBPQ14493 270 aaKnown RBP eCLIP8.29□□□□□ -1.08
YBX3-208ENST00000540447 TMEM71Q6P5X7 295 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 BBS10Q8TAM1 723 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 TMEM163Q8TC26 289 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 PPP1R16AQ96I34 528 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 ORAI3Q9BRQ5 295 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 TMEM43Q9BTV4 400 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 CFAP20Q9Y6A4 193 aaKnown RBP8.29□□□□□ -1.08
YBX3-208ENST00000540447 ENPP4Q9Y6X5 453 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 V9GY05 133 aa8.29□□□□□ -1.08
YBX3-208ENST00000540447 TBL1XO60907 577 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 POMCP01189 267 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 SYPP08247 313 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 GABRB1P18505 474 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 ADARB1P78563 741 aaKnown RBP8.28□□□□□ -1.08
YBX3-208ENST00000540447 PRAMEF18Q5VWM3 479 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 KCTD18Q6PI47 426 aaPredicted RBP8.28□□□□□ -1.08
YBX3-208ENST00000540447 GPR155Q7Z3F1 870 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 NUDT13Q86X67 352 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 ZNF695Q8IW36 515 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 RGL4Q8IZJ4 473 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 FAM86B1Q8N7N1 296 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 OR6K2Q8NGY2 324 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 FAM151AQ8WW52 585 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 HMCESQ96FZ2 354 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 ELOVL1Q9BW60 279 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 SRRQ9GZT4 340 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 CDC42BPGQ6DT37 1551 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 TRABD2BA6NFA1 517 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 TMX2-CTNND1H3BSU7 103 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 ZNF250P15622 560 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 ANXA7P20073 488 aaKnown RBP8.28□□□□□ -1.08
YBX3-208ENST00000540447 TNFRSF1BP20333 461 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 USF1P22415 310 aaPredicted RBP8.28□□□□□ -1.08
YBX3-208ENST00000540447 GRPRP30550 384 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 AWAT2Q6E213 333 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 NOXRED1Q6NXP6 359 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 TOMM20LQ6UXN7 152 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 FAM3CQ92520 227 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 INPP5KQ9BT40 448 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 ENKD1Q9H0I2 346 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 POPDC3Q9HBV1 291 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 RNF19AQ9NV58 838 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 CHRNA9Q9UGM1 479 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 OSGIN2Q9Y236 505 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 A0A0B4J203 849 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 A0A0G2JN53 185 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 CLDN4O14493 209 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 HLA-HP01893 362 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 MMP2P08253 660 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 MMP7P09237 267 aaPredicted RBP8.28□□□□□ -1.08
YBX3-208ENST00000540447 EDN3P14138 238 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 TMEM11P17152 192 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 NSG1P42857 185 aa8.28□□□□□ -1.08
YBX3-208ENST00000540447 SRP9P49458 86 aaKnown RBP8.28□□□□□ -1.08
YBX3-208ENST00000540447 EPHB3P54753 998 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms