RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 TMPRSS11AQ6ZMR5 421 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 SPRYD4Q8WW59 207 aaPredicted RBP15.74■□□□□ 0.11
USP28-208ENST00000540438 NECTIN4Q96NY8 510 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 YIPF2Q9BWQ6 316 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 C1QTNF7Q9BXJ2 289 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 PINK1Q9BXM7 581 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 KLHL28Q9NXS3 571 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 KLK4Q9Y5K2 254 aa15.74■□□□□ 0.11
USP28-208ENST00000540438 A8MUA0 341 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 CASKO14936 926 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 OXSR1O95747 527 aaPredicted RBP15.73■□□□□ 0.11
USP28-208ENST00000540438 IGFBP4P22692 258 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 APEX1P27695 318 aaKnown RBP15.73■□□□□ 0.11
USP28-208ENST00000540438 TNFRSF17Q02223 184 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 ST3GAL3Q11203 375 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 ENPP2Q13822 863 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 CNOT9Q92600 299 aaKnown RBP15.73■□□□□ 0.11
USP28-208ENST00000540438 RERGQ96A58 199 aaPredicted RBP15.73■□□□□ 0.11
USP28-208ENST00000540438 ELSPBP1Q96BH3 223 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 ORAI1Q96D31 301 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 PEX11GQ96HA9 241 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 SPATA5L1Q9BVQ7 753 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 NT5DC2Q9H857 520 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 CPNE7Q9UBL6 633 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 ZNF346Q9UL40 294 aaKnown RBP15.73■□□□□ 0.11
USP28-208ENST00000540438 MAU2Q9Y6X3 613 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 A0A1W2PQ09 198 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 TMCC2O75069 709 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 SMIM11AP58511 58 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 BTG2P78543 158 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 RUNX1T1Q06455 604 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 OR10H4Q8NGA5 316 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 DHRS1Q96LJ7 313 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 POLDIP3Q9BY77 421 aaKnown RBP15.73■□□□□ 0.11
USP28-208ENST00000540438 STUB1Q9UNE7 303 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 CFL2Q9Y281 166 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 TP53BP1Q12888 1972 aaPredicted RBP15.73■□□□□ 0.11
USP28-208ENST00000540438 HEATR5AQ86XA9 2040 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 GUCY1B2O75343 617 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 NCF4Q15080 339 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 ZNF79Q15937 498 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 MTFR2Q6P444 385 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 PEX5LQ8IYB4 626 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 FLVCR1-AS1Q8TAF5 88 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 TMEM163Q8TC26 289 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 FN3KQ9H479 309 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 ENOPH1Q9UHY7 261 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 TBC1D24Q9ULP9 559 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 GRIP1Q9Y3R0 1128 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 PEX16Q9Y5Y5 336 aa15.73■□□□□ 0.11
USP28-208ENST00000540438 SIRT4Q9Y6E7 314 aaPredicted RBP15.73■□□□□ 0.11
USP28-208ENST00000540438 PCDH15Q96QU1 1955 aa15.72■□□□□ 0.11
USP28-208ENST00000540438 ZGLP1P0C6A0 271 aa15.72■□□□□ 0.11
USP28-208ENST00000540438 GABRG2P18507 467 aa15.72■□□□□ 0.11
USP28-208ENST00000540438 ZNF155Q12901 538 aaPredicted RBP15.72■□□□□ 0.11
USP28-208ENST00000540438 ILF3Q12906 894 aaKnown RBP eCLIP15.72■□□□□ 0.11
USP28-208ENST00000540438 FAM53BQ14153 422 aa15.72■□□□□ 0.11
USP28-208ENST00000540438 ARMC4Q5T2S8 1044 aa15.72■□□□□ 0.11
USP28-208ENST00000540438 PDZK1Q5T2W1 519 aa15.72■□□□□ 0.11
USP28-208ENST00000540438 LYPD4Q6UWN0 246 aa15.72■□□□□ 0.11
USP28-208ENST00000540438 FAM26EQ8N5C1 309 aa15.72■□□□□ 0.11
USP28-208ENST00000540438 RFLNBQ8N5W9 214 aa15.72■□□□□ 0.11
USP28-208ENST00000540438 TMEM99Q8N816 258 aa15.72■□□□□ 0.11
USP28-208ENST00000540438 OR13C5Q8NGS8 318 aa15.72■□□□□ 0.11
USP28-208ENST00000540438 C9orf43Q8TAL5 461 aaPredicted RBP15.72■□□□□ 0.11
USP28-208ENST00000540438 CAPSLQ8WWF8 208 aa15.72■□□□□ 0.11
USP28-208ENST00000540438 GAL3ST3Q96A11 431 aa15.72■□□□□ 0.11
USP28-208ENST00000540438 RAB11FIP5Q9BXF6 653 aa15.72■□□□□ 0.11
USP28-208ENST00000540438 RTTNQ86VV8 2226 aa15.72■□□□□ 0.11
USP28-208ENST00000540438 E9PI62 339 aa15.72■□□□□ 0.11
USP28-208ENST00000540438 PEPDP12955 493 aa15.72■□□□□ 0.11
USP28-208ENST00000540438 HNRNPA2B1P22626 353 aaKnown RBP15.72■□□□□ 0.11
USP28-208ENST00000540438 GRPRP30550 384 aa15.72■□□□□ 0.11
USP28-208ENST00000540438 ACVR1BP36896 505 aa15.72■□□□□ 0.11
USP28-208ENST00000540438 RORCP51449 518 aa15.72■□□□□ 0.11
USP28-208ENST00000540438 ABATP80404 500 aa15.72■□□□□ 0.11
USP28-208ENST00000540438 SUZ12Q15022 739 aaKnown RBP15.72■□□□□ 0.11
USP28-208ENST00000540438 P2RY14Q15391 338 aa15.72■□□□□ 0.11
USP28-208ENST00000540438 PYDC2Q56P42 97 aa15.72■□□□□ 0.11
USP28-208ENST00000540438 POMZP3Q6PJE2 187 aa15.72■□□□□ 0.11
USP28-208ENST00000540438 LRRC17Q8N6Y2 441 aa15.72■□□□□ 0.11
USP28-208ENST00000540438 IFT27Q9BW83 186 aa15.72■□□□□ 0.11
USP28-208ENST00000540438 BCL2L10Q9HD36 194 aa15.72■□□□□ 0.11
USP28-208ENST00000540438 MPDZO75970 2070 aa15.72■□□□□ 0.11
USP28-208ENST00000540438 OR10H2O60403 315 aa15.71■□□□□ 0.11
USP28-208ENST00000540438 TBX19O60806 448 aa15.71■□□□□ 0.11
USP28-208ENST00000540438 GAS1P54826 345 aa15.71■□□□□ 0.11
USP28-208ENST00000540438 WNT4P56705 351 aa15.71■□□□□ 0.11
USP28-208ENST00000540438 LARS2Q15031 903 aaKnown RBP15.71■□□□□ 0.11
USP28-208ENST00000540438 KCNJ8Q15842 424 aa15.71■□□□□ 0.11
USP28-208ENST00000540438 DCST2Q5T1A1 773 aa15.71■□□□□ 0.11
USP28-208ENST00000540438 SLC36A4Q6YBV0 504 aa15.71■□□□□ 0.11
USP28-208ENST00000540438 MARCH9Q86YJ5 346 aa15.71■□□□□ 0.11
USP28-208ENST00000540438 PROKR2Q8NFJ6 384 aa15.71■□□□□ 0.11
USP28-208ENST00000540438 SLC38A2Q96QD8 506 aa15.71■□□□□ 0.11
USP28-208ENST00000540438 H2AFY2Q9P0M6 372 aaPredicted RBP15.71■□□□□ 0.11
USP28-208ENST00000540438 TESQ9UGI8 421 aaKnown RBP15.71■□□□□ 0.11
USP28-208ENST00000540438 ATG2AQ2TAZ0 1938 aa15.71■□□□□ 0.11
USP28-208ENST00000540438 HPGDSO60760 199 aa15.71■□□□□ 0.11
USP28-208ENST00000540438 CTSEP14091 401 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms