RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 RLN2P04090 185 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 PRPS1L1P21108 318 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 CRISP1P54107 249 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 FGL1Q08830 312 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 INSL4Q14641 139 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 PAN3Q58A45 887 aaKnown RBP13.09□□□□□ -0.31
LIG1-203ENST00000536218 GRHL2Q6ISB3 625 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 RNF165Q6ZSG1 346 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 WDR53Q7Z5U6 358 aaPredicted RBP13.09□□□□□ -0.31
LIG1-203ENST00000536218 TCEANCQ8N8B7 351 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 PROKR2Q8NFJ6 384 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 TEX47Q8TBZ9 253 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 PIGKQ92643 395 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 ATF6BQ99941 703 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 CLEC4AQ9UMR7 237 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 DYRK1BQ9Y463 629 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 C4BPBP20851 252 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 FCARP24071 287 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 GSTM5P46439 218 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 FABP5Q01469 135 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 UAP1L1Q3KQV9 507 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 IDNKQ5T6J7 187 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 VASNQ6EMK4 673 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 FAM180BQ6P0A1 224 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 MED27Q6P2C8 311 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 MZT2AQ6P582 158 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 DEF8Q6ZN54 512 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 SLCO4C1Q6ZQN7 724 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 OR4A15Q8NGL6 344 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 OR9A1PQ8NGU1 263 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 NELL1Q92832 810 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 C11orf24Q96F05 449 aaPredicted RBP13.09□□□□□ -0.31
LIG1-203ENST00000536218 TREX2Q9BQ50 279 aaPredicted RBP13.09□□□□□ -0.31
LIG1-203ENST00000536218 SOSTQ9BQB4 213 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 DOHHQ9BU89 302 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 CACNG6Q9BXT2 260 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 SERGEFQ9UGK8 458 aa13.09□□□□□ -0.31
LIG1-203ENST00000536218 RUVBL1Q9Y265 456 aaKnown RBP13.09□□□□□ -0.31
LIG1-203ENST00000536218 C2orf92A0A1B0GVN3 265 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 MPZL2O60487 215 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 FGF2P09038 288 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 TAP2Q03519 686 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 LGALS3BPQ08380 585 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 PABPC1L2AQ5JQF8 200 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 TSEN54Q7Z6J9 526 aaKnown RBP13.08□□□□□ -0.32
LIG1-203ENST00000536218 ZER1Q7Z7L7 766 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 BMPERQ8N8U9 685 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 NKX6-2Q9C056 277 aaPredicted RBP13.08□□□□□ -0.32
LIG1-203ENST00000536218 NIT2Q9NQR4 276 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 GSN-AS1Q9NRJ2 163 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 PURGQ9UJV8 347 aaKnown RBP13.08□□□□□ -0.32
LIG1-203ENST00000536218 A0A1W2PP55 124 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 TUBAL3A6NHL2 446 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 PRR23D1E9PI22 279 aaPredicted RBP13.08□□□□□ -0.32
LIG1-203ENST00000536218 PAPLNO95428 1278 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 TGM6O95932 706 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 GASTP01350 101 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 PRR23D2P0DMB1 279 aaPredicted RBP13.08□□□□□ -0.32
LIG1-203ENST00000536218 ETV5P41161 510 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 KCNJ3P48549 501 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 C2orf27AQ580R0 203 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 C3orf38Q5JPI3 329 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 METAP1DQ6UB28 335 aaPredicted RBP13.08□□□□□ -0.32
LIG1-203ENST00000536218 PARM1Q6UWI2 310 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 LYPD4Q6UWN0 246 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 MARCH9Q86YJ5 346 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 OR4K1Q8NGD4 311 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 CMSS1Q9BQ75 279 aaKnown RBP13.08□□□□□ -0.32
LIG1-203ENST00000536218 OSGEPL1Q9H4B0 414 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 IMP3Q9NV31 184 aaKnown RBP13.08□□□□□ -0.32
LIG1-203ENST00000536218 H0YIV9 168 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 EGFP01133 1207 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 CXCL2P19875 107 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 PXNP49023 591 aaPredicted RBP13.08□□□□□ -0.32
LIG1-203ENST00000536218 MC2RQ01718 297 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 MC1RQ01726 317 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 SERTAD2Q14140 314 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 PUM1Q14671 1186 aaKnown RBP eCLIP13.08□□□□□ -0.327e-8■□□□□ 9.8
LIG1-203ENST00000536218 CASP12Q6UXS9 341 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 HDDC3Q8N4P3 179 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 FGF14Q92915 247 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 CRB3Q9BUF7 120 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 DUSP26Q9BV47 211 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 MBNL1Q9NR56 388 aaKnown RBP13.08□□□□□ -0.32
LIG1-203ENST00000536218 GDE1Q9NZC3 331 aa13.08□□□□□ -0.32
LIG1-203ENST00000536218 MRTO4Q9UKD2 239 aaKnown RBP13.08□□□□□ -0.32
LIG1-203ENST00000536218 SELENOFO60613 162 aa13.07□□□□□ -0.32
LIG1-203ENST00000536218 S100A9P06702 114 aaKnown RBP13.07□□□□□ -0.32
LIG1-203ENST00000536218 TFPIP10646 304 aa13.07□□□□□ -0.32
LIG1-203ENST00000536218 RAE1P78406 368 aaKnown RBP13.07□□□□□ -0.32
LIG1-203ENST00000536218 SMAD2Q15796 467 aaKnown RBP13.07□□□□□ -0.32
LIG1-203ENST00000536218 DUOXA1Q1HG43 343 aa13.07□□□□□ -0.32
LIG1-203ENST00000536218 HFEQ30201 348 aa13.07□□□□□ -0.32
LIG1-203ENST00000536218 CPTPQ5TA50 214 aa13.07□□□□□ -0.32
LIG1-203ENST00000536218 HIST2H2AA3Q6FI13 130 aa13.07□□□□□ -0.32
LIG1-203ENST00000536218 MTFR2Q6P444 385 aa13.07□□□□□ -0.32
LIG1-203ENST00000536218 AMZ2Q86W34 360 aa13.07□□□□□ -0.32
LIG1-203ENST00000536218 ZNF687Q8N1G0 1237 aa13.07□□□□□ -0.32
LIG1-203ENST00000536218 BOLLQ8N9W6 283 aaKnown RBP13.07□□□□□ -0.32
LIG1-203ENST00000536218 DNAJB8Q8NHS0 232 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms