RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 SUN2Q9UH99 717 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 FBXW2Q9UKT8 454 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 PLA2G4CQ9UP65 541 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 ANAPC1Q9H1A4 1944 aa3.28□□□□□ -1.88
CD44-235ENST00000532339 IGLV9-49A0A0B4J1Y8 123 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 SPTY2D1-AS1A0A0U1RR47 76 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 C13orf42A0A1B0GVH6 325 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 C5orf51A6NDU8 294 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 C2orf81A6NN90 581 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 H7C423 109 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 COCHO43405 550 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 ZBTB14O43829 449 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 CPNE6O95741 557 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 DLATP10515 647 aaKnown RBP3.27□□□□□ -1.89
CD44-235ENST00000532339 CYP3A5P20815 502 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 CYP2A7P20853 494 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 YWHABP31946 246 aaKnown RBP3.27□□□□□ -1.89
CD44-235ENST00000532339 DUTP33316 252 aaKnown RBP3.27□□□□□ -1.89
CD44-235ENST00000532339 BPIFB3P59826 476 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 OSTNP61366 133 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 ARF5P84085 180 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 OTUD4Q01804 1114 aaKnown RBP3.27□□□□□ -1.89
CD44-235ENST00000532339 GCNT1Q02742 428 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 SPAG1Q07617 926 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 IL10RBQ08334 325 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 TRAP1Q12931 704 aaKnown RBP3.27□□□□□ -1.89
CD44-235ENST00000532339 CBX3Q13185 183 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 FZD2Q14332 565 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 HERC3Q15034 1050 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 RBBP7Q16576 425 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 CHRFAM7AQ494W8 412 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 GPR33Q49SQ1 333 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 SLC35D3Q5M8T2 416 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 TMEM215Q68D42 235 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 RAB12Q6IQ22 244 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 KLHL10Q6JEL2 608 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 C12orf54Q6X4T0 127 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 Q6ZSR6 202 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 ISCA2Q86U28 154 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 SLC47A2Q86VL8 602 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 ANKRD46Q86W74 232 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 PEX5LQ8IYB4 626 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 ZNF619Q8N2I2 560 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 RTL3Q8N8U3 475 aaKnown RBP3.27□□□□□ -1.89
CD44-235ENST00000532339 Q8N9G6 341 aaPredicted RBP3.27□□□□□ -1.89
CD44-235ENST00000532339 ZNF383Q8NA42 475 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 KIAA0895Q8NCT3 520 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 ST7LQ8TDW4 575 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 SLC26A7Q8TE54 656 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 UBLCP1Q8WVY7 318 aaPredicted RBP3.27□□□□□ -1.89
CD44-235ENST00000532339 CKAP2Q8WWK9 683 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 TSACCQ96A04 125 aaPredicted RBP3.27□□□□□ -1.89
CD44-235ENST00000532339 CCDC47Q96A33 483 aaKnown RBP3.27□□□□□ -1.89
CD44-235ENST00000532339 FAM131CQ96AQ9 280 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 CCDC127Q96BQ5 260 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 AP2M1Q96CW1 435 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 PGM2Q96G03 612 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 C5orf30Q96GV9 206 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 EPSTI1Q96J88 318 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 RASL10BQ96S79 203 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 FEM1AQ9BSK4 669 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 PANK2Q9BZ23 570 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 ACPTQ9BZG2 426 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 KRT23Q9C075 422 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 ATAD3AQ9NVI7 634 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 RUVBL2Q9Y230 463 aaKnown RBP3.27□□□□□ -1.89
CD44-235ENST00000532339 BTRCQ9Y297 605 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 PYGO1Q9Y3Y4 419 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 TEX264Q9Y6I9 313 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 TENM3Q9P273 2699 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 DYNC2H1Q8NCM8 4307 aaKnown RBP3.27□□□□□ -1.89
CD44-235ENST00000532339 DNAH1Q9P2D7 4330 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 UNC13CQ8NB66 2214 aa3.27□□□□□ -1.89
CD44-235ENST00000532339 CITO14578 2027 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 IGHV5-10-1A0A0J9YXX1 117 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 TMEM150CB9EJG8 249 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 RTCAO00442 366 aaKnown RBP3.26□□□□□ -1.89
CD44-235ENST00000532339 ATP6V0E1O15342 81 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 ALPPP05187 535 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 FRMD6-AS1P0C7T7 363 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 P4HA1P13674 534 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 F3P13726 295 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 HNRNPA2B1P22626 353 aaKnown RBP3.26□□□□□ -1.89
CD44-235ENST00000532339 AKT2P31751 481 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 CASP14P31944 242 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 MAGEA11P43364 429 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 SERPINH1P50454 418 aaKnown RBP3.26□□□□□ -1.89
CD44-235ENST00000532339 SLC12A3P55017 1021 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 KCNK10P57789 538 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 AKAP17AQ02040 695 aaKnown RBP3.26□□□□□ -1.89
CD44-235ENST00000532339 DMTNQ08495 405 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 PDIA5Q14554 519 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 GTDC1Q4AE62 458 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 SLC25A53Q5H9E4 307 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 KCTD11Q693B1 232 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 KRTAP5-4Q6L8H1 288 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 GCNT7Q6ZNI0 430 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 MMAAQ8IVH4 418 aaKnown RBP3.26□□□□□ -1.89
CD44-235ENST00000532339 LRRC17Q8N6Y2 441 aa3.26□□□□□ -1.89
CD44-235ENST00000532339 CCDC63Q8NA47 563 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms