RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 CEACAM19Q7Z692 300 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 LRRC49Q8IUZ0 686 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 VSTM4Q8IW00 320 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 SLC38A6Q8IZM9 456 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 TMEM123Q8N131 208 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 BPIFB2Q8N4F0 458 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 CLDN19Q8N6F1 224 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 SYT14Q8NB59 555 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 OR13C2Q8NGS9 318 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 TRMT10AQ8TBZ6 339 aaKnown RBP2.36□□□□□ -2.03
CD44-234ENST00000531873 ARNTL2Q8WYA1 636 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 MYLPFQ96A32 169 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 COQ2Q96H96 371 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 SH3YL1Q96HL8 342 aaPredicted RBP2.36□□□□□ -2.03
CD44-234ENST00000531873 LINC00479Q96M42 142 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 C12orf66Q96MD2 445 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 NAP1L5Q96NT1 182 aaPredicted RBP2.36□□□□□ -2.03
CD44-234ENST00000531873 TGM7Q96PF1 710 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 IWS1Q96ST2 819 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 ZBTB18Q99592 522 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 CCT7Q99832 543 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 TMEM43Q9BTV4 400 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 TM2D1Q9BX74 207 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 NFKBIZQ9BYH8 718 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 TRIM6Q9C030 488 aaPredicted RBP2.36□□□□□ -2.03
CD44-234ENST00000531873 ADNPQ9H2P0 1102 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 LRRC40Q9H9A6 602 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 TXLNGQ9NUQ3 528 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 FAM120CQ9NX05 1096 aaKnown RBP2.36□□□□□ -2.03
CD44-234ENST00000531873 RAI14Q9P0K7 980 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 NAALAD2Q9Y3Q0 740 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 WDR45Q9Y484 360 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 GMPPBQ9Y5P6 360 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 GRIN2DO15399 1336 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 KIF16BQ96L93 1317 aa2.36□□□□□ -2.03
CD44-234ENST00000531873 A0A1B0GTH9 108 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 NDUFAF8A1L188 74 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 ZNF840PA6NDX5 716 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 TRABD2BA6NFA1 517 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 ZNF487B1APH4 448 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 G3V4G9 280 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 OR7A17O14581 309 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 PI15O43692 258 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 SNRPCP09234 159 aaKnown RBP2.35□□□□□ -2.03
CD44-234ENST00000531873 ALPIP09923 528 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 UMPSP11172 480 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 ZNF44P15621 663 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 IDSP22304 550 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 MMP11P24347 488 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 ALDH3B2P48448 385 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 SULT1E1P49888 294 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 COX10Q12887 443 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 ELAVL2Q12926 359 aaKnown RBP2.35□□□□□ -2.03
CD44-234ENST00000531873 IL18R1Q13478 541 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 DDX39BQ13838 428 aaKnown RBP2.35□□□□□ -2.03
CD44-234ENST00000531873 LTB4RQ15722 352 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 EXOC3L2Q2M3D2 409 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 C14orf177Q52M58 125 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 NHLRC3Q5JS37 347 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 WSCD1Q658N2 575 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 ZNF57Q68EA5 555 aaPredicted RBP2.35□□□□□ -2.03
CD44-234ENST00000531873 ZNF343Q6P1L6 599 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 PAQR6Q6TCH4 344 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 ZYG11AQ6WRX3 759 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 SYT10Q6XYQ8 523 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 GPRIN3Q6ZVF9 776 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 ACOT1Q86TX2 421 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 SLC47A2Q86VL8 602 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 CDH26Q8IXH8 852 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 LRRC75A-AS1Q8N1F1 130 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 ARL14Q8N4G2 192 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 ZSCAN4Q8NAM6 433 aaPredicted RBP2.35□□□□□ -2.03
CD44-234ENST00000531873 CSNK1G2-AS1Q8NCQ2 148 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 C17orf47Q8NEP4 570 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 BEST4Q8NFU0 473 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 OR5D13Q8NGL4 314 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 OR4D5Q8NGN0 318 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 OR6T1Q8NGN1 323 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 OR1F12Q8NHA8 337 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 ADAMTS16Q8TE57 1224 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 RNF139Q8WU17 664 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 ITLN1Q8WWA0 313 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 BADQ92934 168 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 NT5C3BQ969T7 300 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 SDSLQ96GA7 329 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 C9orf85Q96MD7 179 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 AGAP3Q96P47 875 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 NPAS2Q99743 824 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 SLC6A7Q99884 636 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 HCAR1Q9BXC0 346 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 CAPS2Q9BXY5 557 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 DUSP16Q9BY84 665 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 HEXA-AS1Q9H8Q6 139 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 ELOVL2Q9NXB9 296 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 EHFQ9NZC4 300 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 PCSK1NQ9UHG2 260 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 CRLS1Q9UJA2 301 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 ZNF221Q9UK13 617 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 MEMO1Q9Y316 297 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 STYXL1Q9Y6J8 313 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms