RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	GLT1D1	Q96MS3	346 aa		5.22	□□□□□ -1.57
CD44-231	ENST00000531110	NOL4L	Q96MY1	436 aa	Predicted RBP	5.22	□□□□□ -1.57
CD44-231	ENST00000531110	RDH12	Q96NR8	316 aa		5.22	□□□□□ -1.57
CD44-231	ENST00000531110	EBF4	Q9BQW3	602 aa		5.22	□□□□□ -1.57
CD44-231	ENST00000531110	MXRA8	Q9BRK3	442 aa		5.22	□□□□□ -1.57
CD44-231	ENST00000531110	KATNB1	Q9BVA0	655 aa		5.22	□□□□□ -1.57
CD44-231	ENST00000531110	DDA1	Q9BW61	102 aa		5.22	□□□□□ -1.57
CD44-231	ENST00000531110	UGT2B28	Q9BY64	529 aa		5.22	□□□□□ -1.57
CD44-231	ENST00000531110	GPR88	Q9GZN0	384 aa		5.22	□□□□□ -1.57
CD44-231	ENST00000531110	PDZD7	Q9H5P4	517 aa		5.22	□□□□□ -1.57
CD44-231	ENST00000531110	POLD4	Q9HCU8	107 aa		5.22	□□□□□ -1.57
CD44-231	ENST00000531110	SIRT3	Q9NTG7	399 aa	Predicted RBP	5.22	□□□□□ -1.57
CD44-231	ENST00000531110	MAN2C1	Q9NTJ4	1040 aa		5.22	□□□□□ -1.57
CD44-231	ENST00000531110	ZNF701	Q9NV72	531 aa	Predicted RBP	5.22	□□□□□ -1.57
CD44-231	ENST00000531110	ELOVL5	Q9NYP7	299 aa		5.22	□□□□□ -1.57
CD44-231	ENST00000531110	ERVK-18	Q9QC07	812 aa		5.22	□□□□□ -1.57
CD44-231	ENST00000531110	POMP	Q9Y244	141 aa		5.22	□□□□□ -1.57
CD44-231	ENST00000531110	PLEKHA6	Q9Y2H5	1048 aa		5.22	□□□□□ -1.57
CD44-231	ENST00000531110	MAB21L2	Q9Y586	359 aa		5.22	□□□□□ -1.57
CD44-231	ENST00000531110	OR51B4	Q9Y5P0	310 aa		5.22	□□□□□ -1.57
CD44-231	ENST00000531110	PEX16	Q9Y5Y5	336 aa		5.22	□□□□□ -1.57
CD44-231	ENST00000531110	HS3ST3B1	Q9Y662	390 aa		5.22	□□□□□ -1.57
CD44-231	ENST00000531110	SPACA6	W5XKT8	324 aa		5.22	□□□□□ -1.57
CD44-231	ENST00000531110	YLPM1	P49750	1951 aa	Known RBP	5.22	□□□□□ -1.57
CD44-231	ENST00000531110	OTOF	Q9HC10	1997 aa		5.22	□□□□□ -1.57
CD44-231	ENST00000531110	ZNF541	Q9H0D2	1346 aa		5.22	□□□□□ -1.57
CD44-231	ENST00000531110	ZNF142	P52746	1687 aa	Predicted RBP	5.21	□□□□□ -1.57
CD44-231	ENST00000531110	CLTC	Q00610	1675 aa	Known RBP	5.21	□□□□□ -1.57
CD44-231	ENST00000531110	MED1	Q15648	1581 aa	Predicted RBP	5.21	□□□□□ -1.57
CD44-231	ENST00000531110	ATAD5	Q96QE3	1844 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110		A0A0G2JK05	382 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110		A0A0G2JLW4	131 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	TSTD3	H0UI37	97 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110		M0QYV0	167 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	SLC28A1	O00337	649 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	BTN3A3	O00478	584 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	MDM4	O15151	490 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	ZNF821	O75541	412 aa	Predicted RBP	5.21	□□□□□ -1.58
CD44-231	ENST00000531110	SCO1	O75880	301 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	BEST1	O76090	585 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	C22orf31	O95567	290 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	TTC4	O95801	387 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	BMP15	O95972	392 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	STAG3L1	P0CL83	205 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	ADORA3	P0DMS8	318 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	HIST1H1B	P16401	226 aa	Known RBP	5.21	□□□□□ -1.58
CD44-231	ENST00000531110	PRPH2	P23942	346 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	CDC25A	P30304	524 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	S100A11	P31949	105 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	PNPLA4	P41247	253 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	MAP3K8	P41279	467 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	DPP6	P42658	865 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	MAGEB1	P43366	347 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	PRELP	P51888	382 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	YBEY	P58557	167 aa	Predicted RBP	5.21	□□□□□ -1.58
CD44-231	ENST00000531110	AP3S2	P59780	193 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	RAB2A	P61019	212 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	ABCE1	P61221	599 aa	Known RBP	5.21	□□□□□ -1.58
CD44-231	ENST00000531110	ERVK-25	P63136	954 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	MRPS11	P82912	194 aa	Known RBP	5.21	□□□□□ -1.58
CD44-231	ENST00000531110	TROAP	Q12815	778 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	ALCAM	Q13740	583 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	IRF4	Q15306	451 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	PSG3	Q16557	428 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	ZNF311	Q5JNZ3	666 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	FBXO47	Q5MNV8	452 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	PIK3CD-AS1	Q5SR53	167 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	AVPI1	Q5T686	147 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	GPRC6A	Q5T6X5	926 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	DHRS7B	Q6IAN0	325 aa	Predicted RBP	5.21	□□□□□ -1.58
CD44-231	ENST00000531110	UQCC3	Q6UW78	93 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	ANGPTL5	Q86XS5	388 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	MISP	Q8IVT2	679 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	FOXRED2	Q8IWF2	684 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	OR13D1	Q8NGV5	346 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	OR51A7	Q8NH64	312 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	DYNC2LI1	Q8TCX1	351 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	CHURC1	Q8WUH1	139 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	HGD	Q93099	445 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	PSMG2	Q969U7	264 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	ARRDC3	Q96B67	414 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	PABPC5	Q96DU9	382 aa	Known RBP	5.21	□□□□□ -1.58
CD44-231	ENST00000531110	RAB3C	Q96E17	227 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	MS4A14	Q96JA4	679 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110		Q96MT0	163 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	ZNF48	Q96MX3	618 aa	Predicted RBP	5.21	□□□□□ -1.58
CD44-231	ENST00000531110	LGMN	Q99538	433 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	THTPA	Q9BU02	230 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	SCNM1	Q9BWG6	230 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	ERVK-6	Q9BXR3	956 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	REG4	Q9BYZ8	158 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	TRIM31	Q9BZY9	425 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	ZNF436	Q9C0F3	470 aa	Predicted RBP	5.21	□□□□□ -1.58
CD44-231	ENST00000531110	NMUR2	Q9GZQ4	415 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	DCSTAMP	Q9H295	470 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	TTYH1	Q9H313	450 aa	Predicted RBP	5.21	□□□□□ -1.58
CD44-231	ENST00000531110	DSN1	Q9H410	356 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	COPS7B	Q9H9Q2	264 aa	Predicted RBP	5.21	□□□□□ -1.58
CD44-231	ENST00000531110	POLR1B	Q9H9Y6	1135 aa		5.21	□□□□□ -1.58
CD44-231	ENST00000531110	CACYBP	Q9HB71	228 aa	Known RBP	5.21	□□□□□ -1.58

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