RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 GALNT15Q8N3T1 639 aa19.38■□□□□ 0.69
VPS28-208ENST00000527797 ZNF527Q8NB42 609 aa19.38■□□□□ 0.69
VPS28-208ENST00000527797 GIPC3Q8TF64 312 aa19.38■□□□□ 0.69
VPS28-208ENST00000527797 OSBPL11Q9BXB4 747 aa19.38■□□□□ 0.69
VPS28-208ENST00000527797 GPR87Q9BY21 358 aa19.38■□□□□ 0.69
VPS28-208ENST00000527797 LIN28AQ9H9Z2 209 aaKnown RBP19.38■□□□□ 0.69
VPS28-208ENST00000527797 C21orf140B9A014 251 aa19.37■□□□□ 0.69
VPS28-208ENST00000527797 STMND1H3BQB6 276 aa19.37■□□□□ 0.69
VPS28-208ENST00000527797 SLC30A4O14863 429 aa19.37■□□□□ 0.69
VPS28-208ENST00000527797 COX6A1P12074 109 aa19.37■□□□□ 0.69
VPS28-208ENST00000527797 HPGDP15428 266 aa19.37■□□□□ 0.69
VPS28-208ENST00000527797 RBMS1P29558 406 aaKnown RBP19.37■□□□□ 0.69
VPS28-208ENST00000527797 IFNA8P32881 189 aa19.37■□□□□ 0.69
VPS28-208ENST00000527797 STAT5AP42229 794 aa19.37■□□□□ 0.69
VPS28-208ENST00000527797 LIMS1P48059 325 aa19.37■□□□□ 0.69
VPS28-208ENST00000527797 RPS18P62269 152 aaKnown RBP19.37■□□□□ 0.69
VPS28-208ENST00000527797 DNASE1L3Q13609 305 aa19.37■□□□□ 0.69
VPS28-208ENST00000527797 FGFBP1Q14512 234 aa19.37■□□□□ 0.69
VPS28-208ENST00000527797 BTBD16Q32M84 506 aa19.37■□□□□ 0.69
VPS28-208ENST00000527797 KIRREL2Q6UWL6 708 aa19.37■□□□□ 0.69
VPS28-208ENST00000527797 RANBP3LQ86VV4 465 aaPredicted RBP19.37■□□□□ 0.69
VPS28-208ENST00000527797 MARCH9Q86YJ5 346 aa19.37■□□□□ 0.69
VPS28-208ENST00000527797 TAGAPQ8N103 731 aa19.37■□□□□ 0.69
VPS28-208ENST00000527797 PIK3C3Q8NEB9 887 aa19.37■□□□□ 0.69
VPS28-208ENST00000527797 ADAMTS14Q8WXS8 1223 aa19.37■□□□□ 0.69
VPS28-208ENST00000527797 OMA1Q96E52 524 aa19.37■□□□□ 0.69
VPS28-208ENST00000527797 DHRS1Q96LJ7 313 aa19.37■□□□□ 0.69
VPS28-208ENST00000527797 ADOQ96SZ5 270 aa19.37■□□□□ 0.69
VPS28-208ENST00000527797 MCHR1Q99705 422 aa19.37■□□□□ 0.69
VPS28-208ENST00000527797 FAM117AQ9C073 453 aa19.37■□□□□ 0.69
VPS28-208ENST00000527797 AP4B1Q9Y6B7 739 aa19.37■□□□□ 0.69
VPS28-208ENST00000527797 SOCS6O14544 535 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 HS6ST1O60243 411 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 TSPAN2O60636 221 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 UTS2O95399 124 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 ABCD3P28288 659 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 RNF144AP50876 292 aaPredicted RBP19.36■□□□□ 0.69
VPS28-208ENST00000527797 PNLIPRP2P54317 469 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 MICAQ29983 383 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 NDUFAF7Q7L592 441 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 GRAMD2AQ8IUY3 354 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 OR11G2Q8NGC1 345 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 IMMP1LQ96LU5 166 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 ALPK1Q96QP1 1244 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 TMCC3Q9ULS5 477 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 LRCH1Q9Y2L9 728 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 A0A1W2PQ72 361 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 SERINC4A6NH21 518 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 DLGAP1O14490 977 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 TPST2O60704 377 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 ABCB7O75027 752 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 CCNB2O95067 398 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 THRBP10828 461 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 DLSTP36957 453 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 TAS2R41P59536 307 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 HOXC5Q00444 222 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 FOXD4Q12950 439 aaPredicted RBP19.36■□□□□ 0.69
VPS28-208ENST00000527797 KLHL26Q53HC5 615 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 NHSL2Q5HYW2 709 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 C6orf52Q5T4I8 152 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 OR10G2Q8NGC3 310 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 M1APQ8TC57 530 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 ELP5Q8TE02 316 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 THAP3Q8WTV1 239 aaPredicted RBP19.36■□□□□ 0.69
VPS28-208ENST00000527797 RDH12Q96NR8 316 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 PRR14Q9BWN1 585 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 DEFB126Q9BYW3 111 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 KIF17Q9P2E2 1029 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 ORC6Q9Y5N6 252 aa19.36■□□□□ 0.69
VPS28-208ENST00000527797 WDR87Q6ZQQ6 2873 aa19.35■□□□□ 0.69
VPS28-208ENST00000527797 NSG1A0A0A6YYJ2 146 aa19.35■□□□□ 0.69
VPS28-208ENST00000527797 CPSF4LA6NMK7 179 aaKnown RBP19.35■□□□□ 0.69
VPS28-208ENST00000527797 SCDO00767 359 aa19.35■□□□□ 0.69
VPS28-208ENST00000527797 DENRO43583 198 aaKnown RBP19.35■□□□□ 0.69
VPS28-208ENST00000527797 CYP4B1P13584 511 aa19.35■□□□□ 0.69
VPS28-208ENST00000527797 TBXA2RP21731 343 aa19.35■□□□□ 0.69
VPS28-208ENST00000527797 CD82P27701 267 aa19.35■□□□□ 0.69
VPS28-208ENST00000527797 OTX2P32243 289 aa19.35■□□□□ 0.69
VPS28-208ENST00000527797 ZNF136P52737 540 aa19.35■□□□□ 0.69
VPS28-208ENST00000527797 FGD3Q5JSP0 725 aa19.35■□□□□ 0.69
VPS28-208ENST00000527797 ENTPD8Q5MY95 495 aa19.35■□□□□ 0.69
VPS28-208ENST00000527797 DCST1Q5T197 706 aa19.35■□□□□ 0.69
VPS28-208ENST00000527797 ANKRD34AQ69YU3 496 aa19.35■□□□□ 0.69
VPS28-208ENST00000527797 PLAG1Q6DJT9 500 aa19.35■□□□□ 0.69
VPS28-208ENST00000527797 PLEKHM3Q6ZWE6 761 aa19.35■□□□□ 0.69
VPS28-208ENST00000527797 PPP1R32Q7Z5V6 425 aa19.35■□□□□ 0.69
VPS28-208ENST00000527797 OFCC1Q8IZS5 231 aa19.35■□□□□ 0.69
VPS28-208ENST00000527797 ATG16L2Q8NAA4 619 aa19.35■□□□□ 0.69
VPS28-208ENST00000527797 CNOT9Q92600 299 aaKnown RBP19.35■□□□□ 0.69
VPS28-208ENST00000527797 NACC2Q96BF6 587 aa19.35■□□□□ 0.69
VPS28-208ENST00000527797 POLR2J2Q9GZM3 115 aaKnown RBP19.35■□□□□ 0.69
VPS28-208ENST00000527797 POLR2J3Q9H1A7 115 aaKnown RBP19.35■□□□□ 0.69
VPS28-208ENST00000527797 CTPS2Q9NRF8 586 aa19.35■□□□□ 0.69
VPS28-208ENST00000527797 NPFFR2Q9Y5X5 522 aa19.35■□□□□ 0.69
VPS28-208ENST00000527797 A0A1W2PRQ8 180 aa19.34■□□□□ 0.69
VPS28-208ENST00000527797 WWP2O00308 870 aa19.34■□□□□ 0.69
VPS28-208ENST00000527797 FMO6PO60774 539 aa19.34■□□□□ 0.69
VPS28-208ENST00000527797 SNAP29O95721 258 aa19.34■□□□□ 0.69
VPS28-208ENST00000527797 OXSR1O95747 527 aaPredicted RBP19.34■□□□□ 0.69
VPS28-208ENST00000527797 GKN3PP0CG01 181 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms