RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 CRISP3P54108 245 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 MTPNP58546 118 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 CDC42P60953 191 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 YBX1P67809 324 aaKnown RBP5.45□□□□□ -1.54
CD44-225ENST00000527326 CRADDP78560 199 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 HSD11B2P80365 405 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 MRPS11P82912 194 aaKnown RBP5.45□□□□□ -1.54
CD44-225ENST00000527326 TWF1Q12792 350 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 CNTN1Q12860 1018 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 ITPK1Q13572 414 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 HTR4Q13639 388 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 RSU1Q15404 277 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 SPHARQ15513 63 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 HMGN3Q15651 99 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 NKPD1Q17RQ9 610 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 SPDYE7PQ495Y7 208 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 CARD16Q5EG05 197 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 TMEM255AQ5JRV8 349 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 DCAF10Q5QP82 559 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 ZNF678Q5SXM1 525 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 SFRP5Q5T4F7 317 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 HIST2H3PS2Q5TEC6 136 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 CLEC6AQ6EIG7 209 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 OR52W1Q6IF63 320 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 KIAA1161Q6NSJ0 714 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 LPCAT3Q6P1A2 487 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 MED27Q6P2C8 311 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 SLC39A4Q6P5W5 647 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 DEGS2Q6QHC5 323 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 USP17L6PQ6QN14 398 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 CERS6Q6ZMG9 384 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 IL34Q6ZMJ4 242 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 QSOX2Q6ZRP7 698 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 ABHD13Q7L211 337 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 OAFQ86UD1 273 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 PDZD3Q86UT5 571 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 RANBP3LQ86VV4 465 aaPredicted RBP5.45□□□□□ -1.54
CD44-225ENST00000527326 TPRA1Q86W33 373 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 SLC41A1Q8IVJ1 513 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 CNTN4Q8IWV2 1026 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 OR4N4Q8N0Y3 316 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 OR6V1Q8N148 313 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 SYNE4Q8N205 404 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 GPD1LQ8N335 351 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 COLGALT1Q8NBJ5 622 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 MFSD9Q8NBP5 474 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 CPEB3Q8NE35 698 aaKnown RBP5.45□□□□□ -1.54
CD44-225ENST00000527326 PROKR2Q8NFJ6 384 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 OR2L3Q8NG85 312 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 OR56B2PQ8NGI1 322 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 JOSD2Q8TAC2 188 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 GNPDA2Q8TDQ7 276 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 NEK7Q8TDX7 302 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 ARL11Q969Q4 196 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 FAM120BQ96EK7 910 aaKnown RBP5.45□□□□□ -1.54
CD44-225ENST00000527326 C14orf79Q96F83 325 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 WFIKKN1Q96NZ8 548 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 DMRTA2Q96SC8 542 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 S100A13Q99584 98 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 ATF6BQ99941 703 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 OMDQ99983 421 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 MAPKAP1Q9BPZ7 522 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 PI4K2AQ9BTU6 479 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 ALG8Q9BVK2 526 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 CACNG6Q9BXT2 260 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 NFKBIZQ9BYH8 718 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 CPVLQ9H3G5 476 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 BCAS3Q9H6U6 928 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 SLC25A19Q9HC21 320 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 PTPRHQ9HD43 1115 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 TNFRSF12AQ9NP84 129 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 C1GALT1Q9NS00 363 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 C1orf109Q9NX04 203 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 PIPOXQ9P0Z9 390 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 CFAP97Q9P2B7 532 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 COMMD3Q9UBI1 195 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 GRHPRQ9UBQ7 328 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 FBXL3Q9UKT7 428 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 GABRQQ9UN88 632 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 SLC35A3Q9Y2D2 325 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 POFUT2Q9Y2G5 429 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 MRPS18CQ9Y3D5 142 aaKnown RBP5.45□□□□□ -1.54
CD44-225ENST00000527326 DNAJC15Q9Y5T4 150 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 SCN9AQ15858 1988 aa5.45□□□□□ -1.54
CD44-225ENST00000527326 TBC1D3DA0A087WVF3 549 aa5.44□□□□□ -1.54
CD44-225ENST00000527326 TBC1D3IA0A087WXS9 549 aa5.44□□□□□ -1.54
CD44-225ENST00000527326 TBC1D3EA0A087X179 549 aa5.44□□□□□ -1.54
CD44-225ENST00000527326 TBC1D3KA0A087X1G2 549 aa5.44□□□□□ -1.54
CD44-225ENST00000527326 TBC1D3FA6NER0 549 aaPredicted RBP5.44□□□□□ -1.54
CD44-225ENST00000527326 OR2AT4A6NND4 320 aa5.44□□□□□ -1.54
CD44-225ENST00000527326 SNRPGP15A8MWD9 76 aa5.44□□□□□ -1.54
CD44-225ENST00000527326 B4E171 279 aa5.44□□□□□ -1.54
CD44-225ENST00000527326 TBC1D3LB9A6J9 549 aa5.44□□□□□ -1.54
CD44-225ENST00000527326 NPIPB8E9PQR5 432 aa5.44□□□□□ -1.54
CD44-225ENST00000527326 J3KR12 359 aa5.44□□□□□ -1.54
CD44-225ENST00000527326 M0R143 59 aa5.44□□□□□ -1.54
CD44-225ENST00000527326 UBFD1O14562 309 aaKnown RBP5.44□□□□□ -1.54
CD44-225ENST00000527326 MDM4O15151 490 aa5.44□□□□□ -1.54
CD44-225ENST00000527326 LDLRAD4O15165 306 aa5.44□□□□□ -1.54
CD44-225ENST00000527326 MATN3O15232 486 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms