RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	APOOL	Q6UXV4	268 aa		18.95	■□□□□ 0.62
CD44-222	ENST00000526025	PLCZ1	Q86YW0	608 aa		18.95	■□□□□ 0.62
CD44-222	ENST00000526025	FAM109A	Q8N4B1	249 aa		18.95	■□□□□ 0.62
CD44-222	ENST00000526025	OR1J4	Q8NGS1	313 aa		18.95	■□□□□ 0.62
CD44-222	ENST00000526025	UBQLN3	Q9H347	655 aa		18.95	■□□□□ 0.62
CD44-222	ENST00000526025	MTHFD2L	Q9H903	347 aa	Predicted RBP	18.95	■□□□□ 0.62
CD44-222	ENST00000526025	C15orf41	Q9Y2V0	281 aa		18.95	■□□□□ 0.62
CD44-222	ENST00000526025	DTNA	Q9Y4J8	743 aa		18.95	■□□□□ 0.62
CD44-222	ENST00000526025		A0A0G2JPF8	293 aa		18.94	■□□□□ 0.62
CD44-222	ENST00000526025	HNRNPCL2	B2RXH8	293 aa		18.94	■□□□□ 0.62
CD44-222	ENST00000526025	HNRNPCL3	B7ZW38	293 aa		18.94	■□□□□ 0.62
CD44-222	ENST00000526025		H3BNH8	94 aa		18.94	■□□□□ 0.62
CD44-222	ENST00000526025	AIM2	O14862	343 aa		18.94	■□□□□ 0.62
CD44-222	ENST00000526025	TFEC	O14948	347 aa	Predicted RBP	18.94	■□□□□ 0.62
CD44-222	ENST00000526025	NDUFB5	O43674	189 aa		18.94	■□□□□ 0.62
CD44-222	ENST00000526025	SLC28A2	O43868	658 aa		18.94	■□□□□ 0.62
CD44-222	ENST00000526025	HNRNPCL1	O60812	293 aa	Known RBP	18.94	■□□□□ 0.62
CD44-222	ENST00000526025	ANGPTL1	O95841	491 aa		18.94	■□□□□ 0.62
CD44-222	ENST00000526025	HNRNPCL4	P0DMR1	293 aa		18.94	■□□□□ 0.62
CD44-222	ENST00000526025	RPS4Y1	P22090	263 aa	Known RBP	18.94	■□□□□ 0.62
CD44-222	ENST00000526025	SLC6A2	P23975	617 aa		18.94	■□□□□ 0.62
CD44-222	ENST00000526025	ADH7	P40394	386 aa		18.94	■□□□□ 0.62
CD44-222	ENST00000526025	TDGF1P3	P51864	188 aa		18.94	■□□□□ 0.62
CD44-222	ENST00000526025	MNAT1	P51948	309 aa		18.94	■□□□□ 0.62
CD44-222	ENST00000526025	MLLT10	P55197	1068 aa		18.94	■□□□□ 0.62
CD44-222	ENST00000526025	PPIA	P62937	165 aa	Known RBP	18.94	■□□□□ 0.62
CD44-222	ENST00000526025	ART3	Q13508	389 aa		18.94	■□□□□ 0.62
CD44-222	ENST00000526025	GPR68	Q15743	365 aa		18.94	■□□□□ 0.62
CD44-222	ENST00000526025	KRTCAP3	Q53RY4	240 aa		18.94	■□□□□ 0.62
CD44-222	ENST00000526025	SLC30A8	Q8IWU4	369 aa		18.94	■□□□□ 0.62
CD44-222	ENST00000526025	C10orf111	Q8N326	155 aa		18.94	■□□□□ 0.62
CD44-222	ENST00000526025	TMEM251	Q8N6I4	163 aa		18.94	■□□□□ 0.62
CD44-222	ENST00000526025	FADS6	Q8N9I5	356 aa		18.94	■□□□□ 0.62
CD44-222	ENST00000526025	WDSUB1	Q8N9V3	476 aa		18.94	■□□□□ 0.62
CD44-222	ENST00000526025	TMEM19	Q96HH6	336 aa		18.94	■□□□□ 0.62
CD44-222	ENST00000526025	TREX2	Q9BQ50	279 aa	Predicted RBP	18.94	■□□□□ 0.62
CD44-222	ENST00000526025	SLC39A3	Q9BRY0	314 aa		18.94	■□□□□ 0.62
CD44-222	ENST00000526025	RUBCNL	Q9H714	662 aa		18.94	■□□□□ 0.62
CD44-222	ENST00000526025	PPP4R1L	Q9P1A2	415 aa		18.94	■□□□□ 0.62
CD44-222	ENST00000526025	MKLN1	Q9UL63	735 aa		18.94	■□□□□ 0.62
CD44-222	ENST00000526025	ZNF407	Q9C0G0	2248 aa		18.94	■□□□□ 0.62
CD44-222	ENST00000526025	ZGRF1	Q86YA3	2104 aa		18.94	■□□□□ 0.62
CD44-222	ENST00000526025	NBAS	A2RRP1	2371 aa		18.93	■□□□□ 0.62
CD44-222	ENST00000526025	PCNX3	Q9H6A9	2034 aa		18.93	■□□□□ 0.62
CD44-222	ENST00000526025	AGAP5	A6NIR3	686 aa		18.93	■□□□□ 0.62
CD44-222	ENST00000526025	SCO2	O43819	266 aa		18.93	■□□□□ 0.62
CD44-222	ENST00000526025	UGT2B17	O75795	530 aa		18.93	■□□□□ 0.62
CD44-222	ENST00000526025	CBR3	O75828	277 aa		18.93	■□□□□ 0.62
CD44-222	ENST00000526025	BCHE	P06276	602 aa		18.93	■□□□□ 0.62
CD44-222	ENST00000526025	NUDT7	P0C024	238 aa		18.93	■□□□□ 0.62
CD44-222	ENST00000526025	EDN3	P14138	238 aa		18.93	■□□□□ 0.62
CD44-222	ENST00000526025	MSX1	P28360	303 aa		18.93	■□□□□ 0.62
CD44-222	ENST00000526025	NUDT2	P50583	147 aa		18.93	■□□□□ 0.62
CD44-222	ENST00000526025	CHRNE	Q04844	493 aa		18.93	■□□□□ 0.62
CD44-222	ENST00000526025	SELPLG	Q14242	412 aa		18.93	■□□□□ 0.62
CD44-222	ENST00000526025	ADRM1	Q16186	407 aa		18.93	■□□□□ 0.62
CD44-222	ENST00000526025	PRICKLE2	Q7Z3G6	844 aa		18.93	■□□□□ 0.62
CD44-222	ENST00000526025	MARCH3	Q86UD3	253 aa		18.93	■□□□□ 0.62
CD44-222	ENST00000526025	C11orf65	Q8NCR3	313 aa		18.93	■□□□□ 0.62
CD44-222	ENST00000526025	BBS10	Q8TAM1	723 aa		18.93	■□□□□ 0.62
CD44-222	ENST00000526025	RTN4R	Q9BZR6	473 aa		18.93	■□□□□ 0.62
CD44-222	ENST00000526025	PLSCR2	Q9NRY7	297 aa		18.93	■□□□□ 0.62
CD44-222	ENST00000526025	ARL8B	Q9NVJ2	186 aa		18.93	■□□□□ 0.62
CD44-222	ENST00000526025	KCNE5	Q9UJ90	142 aa		18.93	■□□□□ 0.62
CD44-222	ENST00000526025	MRPS18C	Q9Y3D5	142 aa	Known RBP	18.93	■□□□□ 0.62
CD44-222	ENST00000526025	MST1	P26927	711 aa		18.92	■□□□□ 0.62
CD44-222	ENST00000526025	RFC3	P40938	356 aa		18.92	■□□□□ 0.62
CD44-222	ENST00000526025	GZMM	P51124	257 aa		18.92	■□□□□ 0.62
CD44-222	ENST00000526025	CDK6	Q00534	326 aa		18.92	■□□□□ 0.62
CD44-222	ENST00000526025	TLE1	Q04724	770 aa		18.92	■□□□□ 0.62
CD44-222	ENST00000526025	GANAB	Q14697	944 aa	Known RBP	18.92	■□□□□ 0.62
CD44-222	ENST00000526025	CYP51A1	Q16850	503 aa		18.92	■□□□□ 0.62
CD44-222	ENST00000526025	CMPK2	Q5EBM0	449 aa		18.92	■□□□□ 0.62
CD44-222	ENST00000526025	PDZK1	Q5T2W1	519 aa		18.92	■□□□□ 0.62
CD44-222	ENST00000526025	REEP3	Q6NUK4	255 aa		18.92	■□□□□ 0.62
CD44-222	ENST00000526025	CALHM3	Q86XJ0	350 aa		18.92	■□□□□ 0.62
CD44-222	ENST00000526025	PTOV1	Q86YD1	416 aa		18.92	■□□□□ 0.62
CD44-222	ENST00000526025	CMIP	Q8IY22	773 aa		18.92	■□□□□ 0.62
CD44-222	ENST00000526025	MIB2	Q96AX9	1013 aa		18.92	■□□□□ 0.62
CD44-222	ENST00000526025	JSRP1	Q96MG2	331 aa	Predicted RBP	18.92	■□□□□ 0.62
CD44-222	ENST00000526025	GPR137	Q96N19	417 aa		18.92	■□□□□ 0.62
CD44-222	ENST00000526025	ACKR4	Q9NPB9	350 aa		18.92	■□□□□ 0.62
CD44-222	ENST00000526025	NDE1	Q9NXR1	346 aa		18.92	■□□□□ 0.62
CD44-222	ENST00000526025	HEATR5A	Q86XA9	2040 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	GTF3C1	Q12789	2109 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	NPIPA5	A0A0B4J1W7	369 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	SERINC4	A6NH21	518 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	FAM166B	A8MTA8	275 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	C5orf58	C9J3I9	102 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	NPIPA7	E9PJI5	369 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	GNB5	O14775	395 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	IGHG3	P01860	377 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	HPN	P05981	417 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	DBI	P07108	87 aa	Known RBP	18.91	■□□□□ 0.62
CD44-222	ENST00000526025	RFPL3S	P0C7P2	107 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	NPIPA8	P0DM63	369 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	ETS2	P15036	469 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	SUMO3	P55854	103 aa	Predicted RBP	18.91	■□□□□ 0.62
CD44-222	ENST00000526025	SCARB2	Q14108	478 aa		18.91	■□□□□ 0.62
CD44-222	ENST00000526025	FGFBP1	Q14512	234 aa		18.91	■□□□□ 0.62

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