RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 DKKL1Q9UK85 242 aa12.56□□□□□ -0.4
TCOF1-214ENST00000515035 C2orf78A6NCI8 922 aa12.56□□□□□ -0.4
TCOF1-214ENST00000515035 NPIPA2E9PIF3 369 aa12.56□□□□□ -0.4
TCOF1-214ENST00000515035 NPIPA3F8WFD2 350 aa12.56□□□□□ -0.4
TCOF1-214ENST00000515035 NPC1O15118 1278 aa12.56□□□□□ -0.4
TCOF1-214ENST00000515035 GPR37L1O60883 481 aa12.56□□□□□ -0.4
TCOF1-214ENST00000515035 LEFTY1O75610 366 aa12.56□□□□□ -0.4
TCOF1-214ENST00000515035 ARHGEF15O94989 841 aa12.56□□□□□ -0.4
TCOF1-214ENST00000515035 NDUFB2O95178 105 aa12.56□□□□□ -0.4
TCOF1-214ENST00000515035 HRH2P25021 359 aa12.56□□□□□ -0.4
TCOF1-214ENST00000515035 ZNF789Q5FWF6 425 aa12.56□□□□□ -0.4
TCOF1-214ENST00000515035 LARP4Q71RC2 724 aaKnown RBP eCLIP12.56□□□□□ -0.4
TCOF1-214ENST00000515035 SERPINA11Q86U17 422 aa12.56□□□□□ -0.4
TCOF1-214ENST00000515035 GGHQ92820 318 aa12.56□□□□□ -0.4
TCOF1-214ENST00000515035 FOXRED1Q96CU9 486 aaPredicted RBP12.56□□□□□ -0.4
TCOF1-214ENST00000515035 UHRF1Q96T88 793 aaPredicted RBP12.56□□□□□ -0.4
TCOF1-214ENST00000515035 MICU1Q9BPX6 476 aa12.56□□□□□ -0.4
TCOF1-214ENST00000515035 DPH7Q9BTV6 452 aa12.56□□□□□ -0.4
TCOF1-214ENST00000515035 MTHFD2LQ9H903 347 aaPredicted RBP12.56□□□□□ -0.4
TCOF1-214ENST00000515035 HRASLS2Q9NWW9 162 aa12.56□□□□□ -0.4
TCOF1-214ENST00000515035 OTOL1A6NHN0 477 aaPredicted RBP12.55□□□□□ -0.4
TCOF1-214ENST00000515035 RFXAPO00287 272 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 MPIG6BO95866 241 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 PRSS56P0CW18 603 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 TMEM225BP0DP42 221 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 ENDOUP21128 410 aaKnown RBP12.55□□□□□ -0.4
TCOF1-214ENST00000515035 HMGCLP35914 325 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 TLE3Q04726 772 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 OPCMLQ14982 345 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 FCRLBQ6BAA4 426 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 ZNF689Q96CS4 500 aaPredicted RBP12.55□□□□□ -0.4
TCOF1-214ENST00000515035 PRRT1Q99946 306 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 RCE1Q9Y256 329 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 FEZF1A0PJY2 475 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 TOR1AO14656 332 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 HLA-EP13747 358 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 HOXB9P17482 250 aaPredicted RBP12.55□□□□□ -0.4
TCOF1-214ENST00000515035 CXADRP78310 365 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 MLLT11Q13015 90 aaPredicted RBP12.55□□□□□ -0.4
TCOF1-214ENST00000515035 ESCO2Q56NI9 601 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 FAM180BQ6P0A1 224 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 METAP1DQ6UB28 335 aaPredicted RBP12.55□□□□□ -0.4
TCOF1-214ENST00000515035 METTL27Q8N6F8 245 aaPredicted RBP12.55□□□□□ -0.4
TCOF1-214ENST00000515035 MED30Q96HR3 178 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 DHRS4Q9BTZ2 278 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 HINT2Q9BX68 163 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 PINK1Q9BXM7 581 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 SMIM3Q9BZL3 60 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 NME7Q9Y5B8 376 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 MYH6P13533 1939 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 ARNTLO00327 626 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 PGCP20142 388 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 TGM4P49221 684 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 RING1Q06587 406 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 SLC39A5Q6ZMH5 540 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 FAM83HQ6ZRV2 1179 aaPredicted RBP12.55□□□□□ -0.4
TCOF1-214ENST00000515035 OR56B4Q8NH76 319 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 GIMAP1Q8WWP7 306 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 SLAMF9Q96A28 289 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 PLCXD1Q9NUJ7 323 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 FAM86C1Q9NVL1 165 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 GNG13Q9P2W3 67 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 CCDC163A0A0D9SF12 145 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 FAM171A2A8MVW0 826 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 GAPDHSO14556 408 aaPredicted RBP12.55□□□□□ -0.4
TCOF1-214ENST00000515035 M6PRP20645 277 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 THBS2P35442 1172 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 KCNJ5P48544 419 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 SGSHP51688 502 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 SORDQ00796 357 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 TMEM35AQ53FP2 167 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 OR4C11Q6IEV9 310 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 FRMPD2BQ6IN97 320 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 RANBP10Q6VN20 620 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 OR13F1Q8NGS4 319 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 SAMD10Q9BYL1 202 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 FANCFQ9NPI8 374 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 NPAP1Q9NZP6 1156 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 FADS1O60427 444 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 IL33O95760 270 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 CYBAP13498 195 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 HOXB2P14652 356 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 PLCXD2Q0VAA5 305 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 LY6G5CQ5SRR4 150 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 LACC1Q8IV20 430 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 OR4N5Q8IXE1 308 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 ZNF440Q8IYI8 595 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 ZNF454Q8N9F8 522 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 BADQ92934 168 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 SFXN1Q9H9B4 322 aa12.55□□□□□ -0.4
TCOF1-214ENST00000515035 PHRF1Q9P1Y6 1649 aaKnown RBP12.54□□□□□ -0.4
TCOF1-214ENST00000515035 CPED1A4D0V7 1026 aa12.54□□□□□ -0.4
TCOF1-214ENST00000515035 SYT7O43581 403 aa12.54□□□□□ -0.4
TCOF1-214ENST00000515035 ALPLP05186 524 aa12.54□□□□□ -0.4
TCOF1-214ENST00000515035 ZNF695Q8IW36 515 aa12.54□□□□□ -0.4
TCOF1-214ENST00000515035 MRPL41Q8IXM3 137 aaKnown RBP12.54□□□□□ -0.4
TCOF1-214ENST00000515035 RETREG1Q9H6L5 497 aa12.54□□□□□ -0.4
TCOF1-214ENST00000515035 DDX31Q9H8H2 851 aaKnown RBP12.54□□□□□ -0.4
TCOF1-214ENST00000515035 C2orf42Q9NWW7 574 aa12.54□□□□□ -0.4
TCOF1-214ENST00000515035 EMCNQ9ULC0 261 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms