RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 SLC30A6Q6NXT4 461 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 CD200R1LQ6Q8B3 271 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 TAF8Q7Z7C8 310 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 MEX3DQ86XN8 651 aaKnown RBP13.81□□□□□ -0.2
NUP54-217ENST00000514987 GALNT12Q8IXK2 581 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 SLC37A2Q8TED4 501 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 TMEM239Q8WW34 195 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 GATAD2BQ8WXI9 593 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 SLC35B4Q969S0 331 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 CTHRC1Q96CG8 243 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 C1GALT1C1Q96EU7 318 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 TXNDC15Q96J42 360 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 CD180Q99467 661 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 PRSS27Q9BQR3 290 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 EVA1BQ9NVM1 165 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 CARD8Q9Y2G2 431 aa13.81□□□□□ -0.2
NUP54-217ENST00000514987 SF3B6Q9Y3B4 125 aaKnown RBP13.81□□□□□ -0.2
NUP54-217ENST00000514987 SPTY2D1-AS1A0A0U1RR47 76 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 TRDV1A0A1B0GX56 115 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 ZNF860A6NHJ4 632 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 WWP2O00308 870 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 BRINP1O60477 761 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 LDB3O75112 727 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 DNAJB6O75190 326 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 NKX2-2O95096 273 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 IGHV4-34P06331 123 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 PVRP15151 417 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 GCGRP47871 477 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 LSSP48449 732 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 SNRPNP63162 240 aaKnown RBP13.8□□□□□ -0.2
NUP54-217ENST00000514987 BDH1Q02338 343 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 MGAT2Q10469 447 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 CBX3Q13185 183 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 OR1Q1Q15612 314 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 ZNHIT3Q15649 155 aaPredicted RBP13.8□□□□□ -0.2
NUP54-217ENST00000514987 TMPRSS11FQ6ZWK6 438 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 ZNF485Q8NCK3 441 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 RNF217Q8TC41 542 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 ADAMTS18Q8TE60 1221 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 CHAC2Q8WUX2 184 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 HMGB4Q8WW32 186 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 TRMT61AQ96FX7 289 aaKnown RBP13.8□□□□□ -0.2
NUP54-217ENST00000514987 ABHD8Q96I13 439 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 SAMD8Q96LT4 415 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 KLHL25Q9H0H3 589 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 UBQLN3Q9H347 655 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 TMEM27Q9HBJ8 222 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 GPR27Q9NS67 375 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 ASB6Q9NWX5 421 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 SIDT1Q9NXL6 827 aaKnown RBP13.8□□□□□ -0.2
NUP54-217ENST00000514987 POMT2Q9UKY4 750 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 CBLCQ9ULV8 474 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 BAIAP2Q9UQB8 552 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 CLCA2Q9UQC9 943 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 NTNG1Q9Y2I2 539 aa13.8□□□□□ -0.2
NUP54-217ENST00000514987 MRPS2Q9Y399 296 aaKnown RBP13.8□□□□□ -0.2
NUP54-217ENST00000514987 GOLGA4Q13439 2230 aaKnown RBP13.8□□□□□ -0.2
NUP54-217ENST00000514987 FAM86C2PA6NEL3 165 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 PIP5K1CO60331 668 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 HLA-DPB1P04440 258 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 DRD5P21918 477 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 GABRA3P34903 492 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 ATP6V1E1P36543 226 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 CTBP2P56545 445 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 VSX2P58304 361 aaPredicted RBP13.79□□□□□ -0.2
NUP54-217ENST00000514987 ID2Q02363 134 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 EIF2B5Q13144 721 aaKnown RBP13.79□□□□□ -0.2
NUP54-217ENST00000514987 GPR50Q13585 617 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 CCINQ13939 588 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 MAPK14Q16539 360 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 CRTC2Q53ET0 693 aaPredicted RBP13.79□□□□□ -0.2
NUP54-217ENST00000514987 CCNJQ5T5M9 372 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 OR2G6Q5TZ20 316 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 C22orf42Q6IC83 251 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 CXXC5Q7LFL8 322 aaKnown RBP13.79□□□□□ -0.2
NUP54-217ENST00000514987 GRAMD2AQ8IUY3 354 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 SLC22A18ASQ8N1D0 253 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 CACTIN-AS1Q8N1I8 211 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 SMRP1Q8NCR6 262 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 FANK1Q8TC84 345 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 TM9SF4Q92544 642 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 KIAA1143Q96AT1 154 aaPredicted RBP13.79□□□□□ -0.2
NUP54-217ENST00000514987 ANKRD9Q96BM1 317 aaPredicted RBP13.79□□□□□ -0.2
NUP54-217ENST00000514987 INPP5EQ9NRR6 644 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 TNFRSF10DQ9UBN6 386 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 PAIP2BQ9ULR5 123 aaKnown RBP13.79□□□□□ -0.2
NUP54-217ENST00000514987 MRPS33Q9Y291 106 aaKnown RBP13.79□□□□□ -0.2
NUP54-217ENST00000514987 CAB39Q9Y376 341 aaPredicted RBP13.79□□□□□ -0.2
NUP54-217ENST00000514987 MED31Q9Y3C7 131 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 TTC36A6NLP5 189 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 PLD2O14939 933 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 SNPHO15079 494 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 OR10H2O60403 315 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 SRPX2O60687 465 aaPredicted RBP13.79□□□□□ -0.2
NUP54-217ENST00000514987 LYPD3O95274 346 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 CH25HO95992 272 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 CFL1P23528 166 aaKnown RBP13.79□□□□□ -0.2
NUP54-217ENST00000514987 HTR2AP28223 471 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 BMP8BP34820 402 aa13.79□□□□□ -0.2
NUP54-217ENST00000514987 RBM34P42696 430 aaKnown RBP13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms