RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 ERICH5Q6P6B1 374 aa13.69□□□□□ -0.22
NUP54-213ENST00000513352 TMCO5AQ8N6Q1 288 aa13.69□□□□□ -0.22
NUP54-213ENST00000513352 METTL25Q8N6Q8 603 aa13.69□□□□□ -0.22
NUP54-213ENST00000513352 RNF148Q8N7C7 305 aa13.69□□□□□ -0.22
NUP54-213ENST00000513352 PHOSPHO1Q8TCT1 267 aa13.69□□□□□ -0.22
NUP54-213ENST00000513352 REXO5Q96IC2 774 aaKnown RBP13.69□□□□□ -0.22
NUP54-213ENST00000513352 ZNF583Q96ND8 569 aa13.69□□□□□ -0.22
NUP54-213ENST00000513352 CDRT15Q96T59 188 aa13.69□□□□□ -0.22
NUP54-213ENST00000513352 ALG2Q9H553 416 aa13.69□□□□□ -0.22
NUP54-213ENST00000513352 MTHFD2LQ9H903 347 aaPredicted RBP13.69□□□□□ -0.22
NUP54-213ENST00000513352 PROK2Q9HC23 129 aa13.69□□□□□ -0.22
NUP54-213ENST00000513352 SDHAF3Q9NRP4 125 aa13.69□□□□□ -0.22
NUP54-213ENST00000513352 TUBA8Q9NY65 449 aaPredicted RBP13.69□□□□□ -0.22
NUP54-213ENST00000513352 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.69□□□□□ -0.22
NUP54-213ENST00000513352 GMPR2Q9P2T1 348 aaKnown RBP13.69□□□□□ -0.22
NUP54-213ENST00000513352 PACSIN3Q9UKS6 424 aa13.69□□□□□ -0.22
NUP54-213ENST00000513352 BOD1L1Q8NFC6 3051 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 ANKRD33BA6NCL7 494 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 EIF4E1BA6NMX2 242 aaKnown RBP13.68□□□□□ -0.22
NUP54-213ENST00000513352 FAM166BA8MTA8 275 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 ALG1L2C9J202 215 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 EBAG9O00559 213 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 CYP7B1O75881 506 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 PGM3O95394 542 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 NGFRP08138 427 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 IL7RP16871 459 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 TCN1P20061 433 aaPredicted RBP13.68□□□□□ -0.22
NUP54-213ENST00000513352 PTGDSP41222 190 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 GSK3BP49841 420 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 GZMMP51124 257 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 TOMM20Q15388 145 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 INPP5JQ15735 1006 aaPredicted RBP13.68□□□□□ -0.22
NUP54-213ENST00000513352 ZNF141Q15928 474 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 INAQ16352 499 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 INTS11Q5TA45 600 aaKnown RBP13.68□□□□□ -0.22
NUP54-213ENST00000513352 PRAMEF8Q5VWM4 474 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 PRAMEF7Q5VXH5 474 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 TMEM81Q6P7N7 255 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 FAM180AQ6UWF9 173 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 APOOLQ6UXV4 268 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 CCDC121Q6ZUS5 278 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 CALHM3Q86XJ0 350 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 SLC30A8Q8IWU4 369 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 MICU2Q8IYU8 434 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 OR4K17Q8NGC6 315 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 OR1J4Q8NGS1 313 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 OR52P1PQ8NH57 321 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 WDR60Q8WVS4 1066 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 SH3YL1Q96HL8 342 aaPredicted RBP13.68□□□□□ -0.22
NUP54-213ENST00000513352 ZNF607Q96SK3 696 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 SAP130Q9H0E3 1048 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.68□□□□□ -0.22
NUP54-213ENST00000513352 TMEM181Q9P2C4 612 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 ABCD2Q9UBJ2 740 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 DTNAQ9Y4J8 743 aa13.68□□□□□ -0.22
NUP54-213ENST00000513352 A0A1W2PQD3 144 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 ELOVL7A1L3X0 281 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 SERINC4A6NH21 518 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 TTLL8A6PVC2 850 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 C17orf51A8MQB3 221 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 NPIPB9F8W1W9 429 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 ACOT7O00154 380 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 TFECO14948 347 aaPredicted RBP13.67□□□□□ -0.22
NUP54-213ENST00000513352 GYG2O15488 501 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 DNAJA2O60884 412 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 UGT2B17O75795 530 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 PDE9AO76083 593 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 DBIP07108 87 aaKnown RBP13.67□□□□□ -0.22
NUP54-213ENST00000513352 GUSBP08236 651 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 UBL4AP11441 157 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 GDF1P27539 372 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 CPOXP36551 454 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 CCR4P51679 360 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 PPIAP62937 165 aaKnown RBP13.67□□□□□ -0.22
NUP54-213ENST00000513352 BNIP1Q12981 228 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 LARS2Q15031 903 aaKnown RBP13.67□□□□□ -0.22
NUP54-213ENST00000513352 CD226Q15762 336 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 MAPK14Q16539 360 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 NDUFAF6Q330K2 333 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 LIN52Q52LA3 116 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 KLHL26Q53HC5 615 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 SAMD4BQ5PRF9 694 aaKnown RBP13.67□□□□□ -0.22
NUP54-213ENST00000513352 C6orf89Q6UWU4 347 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 VRK2Q86Y07 508 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 CISD2Q8N5K1 135 aaKnown RBP13.67□□□□□ -0.22
NUP54-213ENST00000513352 Q8NA96 180 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 LSM14AQ8ND56 463 aaKnown RBP13.67□□□□□ -0.22
NUP54-213ENST00000513352 SLC26A7Q8TE54 656 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 DUSP19Q8WTR2 217 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 FIG4Q92562 907 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 ZG16BQ96DA0 208 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 TMEM41AQ96HV5 264 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 FRMD6Q96NE9 622 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 SPATA5L1Q9BVQ7 753 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 TTTY12Q9BZ98 90 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 RTN4RQ9BZR6 473 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 ZFP64Q9NPA5 681 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 SUCOQ9UBS9 1254 aaKnown RBP13.67□□□□□ -0.22
NUP54-213ENST00000513352 B4GALT7Q9UBV7 327 aa13.67□□□□□ -0.22
NUP54-213ENST00000513352 KCNE5Q9UJ90 142 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms